RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 NKAPLQ5M9Q1 402 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 CLEC18BQ6UXF7 455 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 CCBE1Q6UXH8 406 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 DTX2Q86UW9 622 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 GAPTQ8N292 157 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 MUC15Q8N387 334 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 GCSAMQ8N6F7 178 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 CLEC18CQ8NCF0 446 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 LRRC29Q8WV35 223 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 HPS1Q92902 700 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 FBXW5Q969U6 566 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 SPOCK3Q9BQ16 436 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 EGLN1Q9GZT9 426 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 RIMS4Q9H426 269 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 C12orf4Q9NQ89 552 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 UFSP2Q9NUQ7 469 aa12.57□□□□□ -0.4
CCDC88C-202ENST00000334448 FAM221AA4D161 298 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF736B4DX44 427 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 SSX4O60224 188 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 NAPSAO96009 420 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 GLRA1P23415 457 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 SNRPD2P62316 118 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 RBM39Q14498 530 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 MEF2DQ14814 521 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 ZMYND11Q15326 602 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 SPRNQ5BIV9 151 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 VAX1Q5SQQ9 334 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 C11orf71Q6IPW1 123 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 STEAP1BQ6NZ63 245 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 MOGAT3Q86VF5 341 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 ENKURQ8TC29 256 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 SNAPC3Q92966 411 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 FAAP24Q9BTP7 215 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 IFT46Q9NQC8 304 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 FAIMQ9NVQ4 179 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 SLC2A8Q9NY64 477 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 RNF7Q9UBF6 113 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 GLS2Q9UI32 602 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 AK3Q9UIJ7 227 aa12.56□□□□□ -0.4
CCDC88C-202ENST00000334448 LINC00854A0A1B0GVQ3 168 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 FAM240BA0A1B0GVZ2 78 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 hCG_1807616A0A1W2PRN6 198 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 HS3ST1O14792 307 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 SH2D1BO14796 132 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 HAND1O96004 215 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 CD3DP04234 171 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 FCGR3AP08637 254 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 SPNP16150 400 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 MDH2P40926 338 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 KCNJ3P48549 501 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 BATF2Q8N1L9 274 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 SUMF2Q8NBJ7 301 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 OR4C16Q8NGL9 310 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 OR11L1Q8NGX0 322 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 CYYR1Q96J86 154 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 CMSS1Q9BQ75 279 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 MARVELD1Q9BSK0 173 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 DPCDQ9BVM2 203 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 WDR13Q9H1Z4 485 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 DYNLRB1Q9NP97 96 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 ROS1P08922 2347 aa12.55□□□□□ -0.4
CCDC88C-202ENST00000334448 IGHV3-64DA0A0J9YX35 117 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 MEIS3P1A6NDR6 274 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 A6NNC1 897 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 MCRIP1C9JLW8 97 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 SLC33A1O00400 549 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 WNT9BO14905 357 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 DEGS1O15121 323 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 FSTL3O95633 263 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 OR2H2O95918 312 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 DANCRP0C864 163 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 RNF224P0DH78 156 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 EGR1P18146 543 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 RAG2P55895 527 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 TAS2R46P59540 309 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 SRSF1Q07955 248 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 ATAD3CQ5T2N8 411 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 TEX36Q5VZQ5 186 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF880Q6PDB4 577 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 MEX3BQ6ZN04 569 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 GVQW1Q8N7I0 195 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 CREB3L1Q96BA8 519 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 DPAGT1Q9H3H5 408 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 SAP30LQ9HAJ7 183 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 CBLN4Q9NTU7 201 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF222Q9UK12 451 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 PPP1R3CQ9UQK1 317 aa12.54□□□□□ -0.4
CCDC88C-202ENST00000334448 A0A1W2PPR1 153 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 LRRC30A6NM36 301 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 H7C1Q1 480 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 RAB3DO95716 219 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 MT-ND4P03905 459 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 CSN2P05814 226 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 ZNF735P0CB33 412 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 DUSP1P28562 367 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 SNU13P55769 128 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 MRPS15P82914 257 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 RNASE10Q5GAN6 216 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 AGAP6Q5VW22 663 aa12.53□□□□□ -0.4
CCDC88C-202ENST00000334448 PLET1Q6UQ28 207 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms