RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 HMX3A6NHT5 357 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 E7EQL1 145 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 M0QYG6 137 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ZG16O60844 167 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 NDUFB6O95139 128 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ZNF735P0CB33 412 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 TRAPPC2P0DI81 140 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 TRAPPC2BP0DI82 140 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 SERPINF1P36955 418 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 SNU13P55769 128 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 MRPS15P82914 257 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 SPIN3Q5JUX0 258 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 Q6P435 159 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ZNF826PQ6ZT77 177 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR51S1Q8NGJ8 323 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR6F1Q8NGZ6 308 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR4K15Q8NH41 348 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR56B4Q8NH76 319 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR2V2Q96R30 315 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 DIRC2Q96SL1 478 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 UFSP2Q9NUQ7 469 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 SLC2A8Q9NY64 477 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 PAIP2BQ9ULR5 123 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 RNF115Q9Y4L5 304 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 A0A0B4J293 547 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 B8ZZF3 427 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 SPRY3O43610 288 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 IGHV1-46P01743 117 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 H2AFB2P0C5Z0 115 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 TNFSF4P23510 183 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 DUSP1P28562 367 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 HRH1P35367 487 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 ZMYND11Q15326 602 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 VAX1Q5SQQ9 334 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 BRICD5Q6PL45 260 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 FIP1L1Q6UN15 594 aaKnown RBP11.92□□□□□ -0.5
SS18-201ENST00000269137 BEST4Q8NFU0 473 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 HDHD3Q9BSH5 251 aaPredicted RBP11.92□□□□□ -0.5
SS18-201ENST00000269137 ST6GALNAC5Q9BVH7 336 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 C1orf123Q9NWV4 160 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 RASL12Q9NYN1 266 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 IL19Q9UHD0 177 aa11.92□□□□□ -0.5
SS18-201ENST00000269137 TRAV6A0A075B6T7 132 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 TRAV24A0A0B4J272 114 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 UBE2QL1A1L167 161 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 DEFB108AA8MXU0 73 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 DISC1C4P0D8 188 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 MCRIP1C9JLW8 97 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 DEGS1O15121 323 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 SIAH2O43255 324 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 DHFRP00374 187 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 AMY2AP04746 511 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 AMY2BP19961 511 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 TAS2R46P59540 309 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 RBMS2Q15434 407 aaKnown RBP11.91□□□□□ -0.5
SS18-201ENST00000269137 KCNJ8Q15842 424 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 TATDN3Q17R31 274 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 MICBQ29980 383 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 BPIFB2Q8N4F0 458 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 ERGIC1Q969X5 290 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 BBC3Q96PG8 261 aaPredicted RBP11.91□□□□□ -0.5
SS18-201ENST00000269137 SLC6A7Q99884 636 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 PRRT1Q99946 306 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 TMEM204Q9BSN7 226 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 C20orf85Q9H1P6 137 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 FN3KRPQ9HA64 309 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 C12orf4Q9NQ89 552 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 ZNF230Q9UIE0 474 aaPredicted RBP11.91□□□□□ -0.5
SS18-201ENST00000269137 SCP2D1Q9UJQ7 156 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 ZNF221Q9UK13 617 aa11.91□□□□□ -0.5
SS18-201ENST00000269137 CD55P08174 381 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 FCGR3AP08637 254 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 LOXP28300 417 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 APOBEC3AP31941 199 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 TNFAIP6P98066 277 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 RBM39Q14498 530 aaKnown RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 EFNB3Q15768 340 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 ACP7Q6ZNF0 438 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SUMF2Q8NBJ7 301 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 ITLN1Q8WWA0 313 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SLC25A21Q9BQT8 299 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 RIMS4Q9H426 269 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 ZNF701Q9NV72 531 aaPredicted RBP11.9□□□□□ -0.5
SS18-201ENST00000269137 CACNA1DQ01668 2161 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 hCG_1807616A0A1W2PRN6 198 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 C17orf100A8MU93 164 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SRRM5B3KS81 715 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 C3orf80F5H4A9 247 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SH2D1BO14796 132 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 NAPSAO96009 420 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 KNG1P01042 644 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 GLRA1P23415 457 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SRSF7Q16629 238 aaKnown RBP eCLIP11.9□□□□□ -0.5
SS18-201ENST00000269137 SMIM21Q3B7S5 101 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 SHEQ5VZ18 495 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 Q6ZS49 121 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 FAM90A1Q86YD7 464 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 ARRDC1Q8N5I2 433 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 OR5AP2Q8NGF4 316 aa11.9□□□□□ -0.5
SS18-201ENST00000269137 OR5H2Q8NGV7 314 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms