RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 NHLH2Q02577 135 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 ZFP36L1Q07352 338 aaKnown RBP16.17■□□□□ 0.18
CPSF3-201ENST00000238112 ETV3LQ6ZN32 361 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 SLC25A26Q70HW3 274 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 HSD17B11Q8NBQ5 300 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 SLC39A7Q92504 469 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 TP53RKQ96S44 253 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 STRAPQ9Y3F4 350 aaKnown RBP16.17■□□□□ 0.18
CPSF3-201ENST00000238112 OTX2P32243 289 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 AKR1C3P42330 323 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 FHITP49789 147 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 DUSP3P51452 185 aaPredicted RBP16.17■□□□□ 0.18
CPSF3-201ENST00000238112 SRPXP78539 464 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 CALHM1Q8IU99 346 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 BATF2Q8N1L9 274 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 CLCC1Q96S66 551 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 SH3BGRL3Q9H299 93 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 RNF122Q9H9V4 155 aa16.17■□□□□ 0.18
CPSF3-201ENST00000238112 C3orf85A0A1B0GTC6 90 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 EDN3P14138 238 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 FOLR2P14207 255 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 OR4D5Q8NGN0 318 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 ADGRG7Q96K78 797 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 FAM86C1Q9NVL1 165 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 P4HTMQ9NXG6 502 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 LRRC3CA6NJW4 275 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 MPPED1O15442 326 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 IGHEP01854 428 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 PMELP40967 661 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 UCP2P55851 309 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 Q6ZPA2 131 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 FAM185AQ8N0U4 392 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 ABHD3Q8WU67 409 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 COA4Q9NYJ1 87 aa16.16■□□□□ 0.18
CPSF3-201ENST00000238112 ZNF587BE7ETH6 402 aa16.15■□□□□ 0.18
CPSF3-201ENST00000238112 C1QL1O75973 258 aa16.15■□□□□ 0.18
CPSF3-201ENST00000238112 AWAT1Q58HT5 328 aa16.15■□□□□ 0.18
CPSF3-201ENST00000238112 IGSF11Q5DX21 431 aa16.15■□□□□ 0.18
CPSF3-201ENST00000238112 SPACA1Q9HBV2 294 aa16.15■□□□□ 0.18
CPSF3-201ENST00000238112 CCDC163A0A0D9SF12 145 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 M0R036 132 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 IFNA4P05014 189 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 SNRNP70P08621 437 aaKnown RBP16.14■□□□□ 0.18
CPSF3-201ENST00000238112 GDF1P27539 372 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 NPBWR2P48146 333 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 NOVA1P51513 510 aaKnown RBP16.14■□□□□ 0.18
CPSF3-201ENST00000238112 RPS18P62269 152 aaKnown RBP16.14■□□□□ 0.18
CPSF3-201ENST00000238112 DPPA2Q7Z7J5 298 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 SFT2D1Q8WV19 159 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 HPSE2Q8WWQ2 592 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 CPNE4Q96A23 557 aaPredicted RBP16.14■□□□□ 0.18
CPSF3-201ENST00000238112 SPSB4Q96A44 273 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 PBDC1Q9BVG4 233 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 C1QTNF5Q9BXJ0 243 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 PRDM14Q9GZV8 571 aa16.14■□□□□ 0.18
CPSF3-201ENST00000238112 RPL36A-HNRNPH2H7BZ11 118 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 CYTIPO60759 359 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 CDS2O95674 445 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 IGHV3-9P01782 118 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 MMP7P09237 267 aaPredicted RBP16.14■□□□□ 0.17
CPSF3-201ENST00000238112 PTAFRP25105 342 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 EWSR1Q01844 656 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPSF3-201ENST00000238112 SPIN3Q5JUX0 258 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 EXTL1Q92935 676 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF845Q96IR2 970 aaPredicted RBP16.14■□□□□ 0.17
CPSF3-201ENST00000238112 PAPOLGQ9BWT3 736 aaKnown RBP16.14■□□□□ 0.17
CPSF3-201ENST00000238112 PLSCR2Q9NRY7 297 aa16.14■□□□□ 0.17
CPSF3-201ENST00000238112 UBE2J1Q9Y385 318 aaPredicted RBP16.14■□□□□ 0.17
CPSF3-201ENST00000238112 C1orf196B1AJZ1 125 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 TRDCB7Z8K6 153 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF44P15621 663 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 Q0VFX4 171 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 HABP2Q14520 560 aaPredicted RBP16.13■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM182Q6ZP80 229 aaPredicted RBP16.13■□□□□ 0.17
CPSF3-201ENST00000238112 PPP1R32Q7Z5V6 425 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF695Q8IW36 515 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 OR2C3Q8N628 320 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 KDF1Q8NAX2 398 aaPredicted RBP16.13■□□□□ 0.17
CPSF3-201ENST00000238112 POM121Q96HA1 1249 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 BOD1Q96IK1 185 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 TMEM222Q9H0R3 208 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 NKX2-6A6NCS4 301 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 CLDN15P56746 228 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 ACER2Q5QJU3 275 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 ZNF565Q8N9K5 539 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 CPEB3Q8NE35 698 aaKnown RBP16.13■□□□□ 0.17
CPSF3-201ENST00000238112 FAM213BQ8TBF2 198 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 HIST1H2BAQ96A08 127 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 SCRT1Q9BWW7 348 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 EGLN1Q9GZT9 426 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 SLC7A10Q9NS82 523 aa16.13■□□□□ 0.17
CPSF3-201ENST00000238112 RYDENQ9NUL5 291 aaKnown RBP16.13■□□□□ 0.17
CPSF3-201ENST00000238112 C7orf77A4D0Y5 90 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 PATE3B3GLJ2 98 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 TK1P04183 234 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 GNRHRP30968 328 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 NKX2-1P43699 371 aaPredicted RBP16.12■□□□□ 0.17
CPSF3-201ENST00000238112 ASCL1P50553 236 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 TBC1D26Q86UD7 250 aa16.12■□□□□ 0.17
CPSF3-201ENST00000238112 LFNGQ8NES3 379 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms