RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 MOB1AQ9H8S9 216 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 PAPOLBQ9NRJ5 636 aaKnown RBP11.95□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF446Q9NWS9 450 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 ING3Q9NXR8 418 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 MTCH1Q9NZJ7 389 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 DPM3Q9P2X0 92 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 TMEM14AQ9Y6G1 99 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 R4GMQ9 66 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 U3KQK5 164 aa11.95□□□□□ -0.5
SYNE2-228ENST00000639659 CCDC182A6NF36 153 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 SIRPB1O00241 398 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 SNX3O60493 162 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 OR2F2O95006 317 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 POU3F4P49335 361 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 CXCR4P61073 352 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 CDK5Q00535 292 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 ROM1Q03395 351 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 DCTN2Q13561 401 aaKnown RBP11.94□□□□□ -0.5
SYNE2-228ENST00000639659 SPATS1Q496A3 300 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF322Q6U7Q0 402 aaPredicted RBP11.94□□□□□ -0.5
SYNE2-228ENST00000639659 C18orf65Q6ZTR6 163 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 OSR2Q8N2R0 312 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 KLHL30-AS1Q8NEE0 82 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF596Q8TC21 504 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 RBM14Q96PK6 669 aaKnown RBP11.94□□□□□ -0.5
SYNE2-228ENST00000639659 DUX3Q96PT4 197 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 MCRIP2Q9BUT9 160 aaKnown RBP11.94□□□□□ -0.5
SYNE2-228ENST00000639659 PCDHGB5Q9Y5G0 923 aa11.94□□□□□ -0.5
SYNE2-228ENST00000639659 IGKV1-27A0A075B6S5 117 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 A0A1B0GTI1 187 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 LEUTXA8MZ59 168 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 TOR1AO14656 332 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 RAP2AP10114 183 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 PRKACAP17612 351 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 PRKACGP22612 351 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 CDK2P24941 298 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 LMO1P25800 156 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 OR3A4PP47883 348 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 THBS3P49746 956 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 RPL23AP62750 156 aaKnown RBP11.93□□□□□ -0.5
SYNE2-228ENST00000639659 DGCR2P98153 550 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 SLC35F2Q8IXU6 374 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 ELMOD2Q8IZ81 293 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 BORCS8Q96FH0 119 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 GAL3ST2Q9H3Q3 398 aa11.93□□□□□ -0.5
SYNE2-228ENST00000639659 RBFOX1Q9NWB1 397 aaKnown RBP11.93□□□□□ -0.5
SYNE2-228ENST00000639659 TRGV10A0A0A0MS01 117 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 ARRDC5A6NEK1 342 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF670-ZNF695F2Z2N8 137 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 M0R129 80 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 SYT7O43581 403 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 PSPNO60542 156 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 SRSF10O75494 262 aaKnown RBP11.92□□□□□ -0.5
SYNE2-228ENST00000639659 AMY1AP04745 511 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 AMY2AP04746 511 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 P2RX3P56373 397 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 MS4A2Q01362 244 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 BCDIN3DQ7Z5W3 292 aaKnown RBP11.92□□□□□ -0.5
SYNE2-228ENST00000639659 NOL4LQ96MY1 436 aaPredicted RBP11.92□□□□□ -0.5
SYNE2-228ENST00000639659 TBX5Q99593 518 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 ASCL2Q99929 193 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF286AQ9HBT8 521 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 GLS2Q9UI32 602 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 LINC00527Q9UJ94 153 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 MOB4Q9Y3A3 225 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 SNX5Q9Y5X3 404 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 HSPE1-MOB4S4R3N1 261 aa11.92□□□□□ -0.5
SYNE2-228ENST00000639659 B2RBV5 119 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 MGST3O14880 152 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 CYB5AP00167 134 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 BCL3P20749 454 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 GDNFP39905 211 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 CEACAM3P40198 252 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 MNDAP41218 407 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 OR3A1P47881 315 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 MNAT1P51948 309 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 FUT6P51993 359 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 ACTR3P61158 418 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 BDH1Q02338 343 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 ZNF91Q05481 1191 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 GK3PQ14409 553 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 HES1Q14469 280 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 KPNB1Q14974 876 aaKnown RBP11.91□□□□□ -0.5
SYNE2-228ENST00000639659 UBE2V2Q15819 145 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 TPTE2P1Q5T6R2 138 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 OR52W1Q6IF63 320 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 OR2W3Q7Z3T1 314 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 YIPF7Q8N8F6 280 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 PRR25Q96S07 402 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 ADI1Q9BV57 179 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 SLC25A19Q9HC21 320 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 DNAJB9Q9UBS3 223 aa11.91□□□□□ -0.5
SYNE2-228ENST00000639659 UBE2J1Q9Y385 318 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-228ENST00000639659 KIAA2026Q5HYC2 2103 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 SERPINE3A8MV23 424 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 H0YHG0 523 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 M0QZK8 103 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 GATBO75879 557 aaKnown RBP11.9□□□□□ -0.5
SYNE2-228ENST00000639659 NFYBP25208 207 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 NPBWR2P48146 333 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms