RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 UTF1Q5T230 341 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 LINC01590Q5TEZ4 76 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 OR52W1Q6IF63 320 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 Q8N1Y9 231 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 OR1N2Q8NGR9 330 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 GATAD1Q8WUU5 269 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 ST6GALNAC6Q969X2 333 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 INTS14Q96SY0 518 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 NIPAL2Q9H841 368 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 SAR1AQ9NR31 198 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 OOSP1A8MZH6 123 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 OVOL1O14753 267 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 GSTA4O15217 222 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 GPR12P47775 334 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 ESRRGP62508 458 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 RIPPLY1Q0D2K3 151 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 COQ5Q5HYK3 327 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 ZNF684Q5T5D7 378 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 FAM53AQ6NSI3 398 aaPredicted RBP11.27□□□□□ -0.61
CLN3-249ENST00000636685 ANGPTL5Q86XS5 388 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 CREB3L1Q96BA8 519 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 C7orf34Q96L11 122 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 GNB4Q9HAV0 340 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 RETNQ9HD89 108 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 KIAA1456Q9P272 454 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 PIGLQ9Y2B2 252 aa11.27□□□□□ -0.61
CLN3-249ENST00000636685 UBE2J1Q9Y385 318 aaPredicted RBP11.27□□□□□ -0.61
CLN3-249ENST00000636685 PQLC2LA1A4F0 135 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 A8MZ25 164 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 NRASP01111 189 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 GABRR1P24046 479 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 MPZP25189 248 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 PEX2P28328 305 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 CD34P28906 385 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 MTNR1BP49286 362 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 PSMA6P60900 246 aaKnown RBP11.26□□□□□ -0.61
CLN3-249ENST00000636685 LIPEQ05469 1076 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 ZNF616Q08AN1 781 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 SF3A3Q12874 501 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLN3-249ENST00000636685 HEPN1Q6WQI6 88 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 ASRGL1Q7L266 308 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 COMMD2Q86X83 199 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 FAM71E2Q8N5Q1 922 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 OR52L1Q8NGH7 329 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 OR8D4Q8NGM9 314 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 OR6Q1Q8NGQ2 317 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 STON2Q8WXE9 905 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 TOMM40LQ969M1 308 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 RPEQ96AT9 228 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 OR5B12Q96R08 314 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 GON7Q9BXV9 100 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 GPR173Q9NS66 373 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 TAS2R1Q9NYW7 299 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 CDH10Q9Y6N8 788 aa11.26□□□□□ -0.61
CLN3-249ENST00000636685 A0A1W2PPI3 338 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 I3L521 148 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 GSC2O15499 205 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 PSPNO60542 156 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 INMTO95050 263 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 IGKV1D-33P01593 117 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 IGKV1-33P01594 117 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 IGHG4P01861 327 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 NCK1P16333 377 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 PRRX1P54821 245 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 GNB1P62873 340 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 CFHR3Q02985 330 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 TSPAN31Q12999 210 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 RIPK1Q13546 671 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 SHFQ7M4L6 423 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 SGPP2Q8IWX5 399 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 GNPDA2Q8TDQ7 276 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 FAM162AQ96A26 154 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 SIKE1Q9BRV8 207 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 MED20Q9H944 212 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 DCAF13Q9NV06 445 aaKnown RBP11.25□□□□□ -0.61
CLN3-249ENST00000636685 GID8Q9NWU2 228 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 ENPP5Q9UJA9 477 aa11.25□□□□□ -0.61
CLN3-249ENST00000636685 MUC4Q99102 2169 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 A0A0U1RQV5 110 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 BBIP1A8MTZ0 92 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 GADD45GO95257 159 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 CNTFRP26992 372 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 PSMB8P28062 276 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 GSTT1P30711 240 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 NUDT2P50583 147 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 BLVRAP53004 296 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 P2RX3P56373 397 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 DIAPH2-AS1Q14236 149 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 HAPLN4Q86UW8 402 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 CATSPERDQ86XM0 798 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 LYPD6Q86Y78 171 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 RPP25LQ8N5L8 163 aaKnown RBP11.24□□□□□ -0.61
CLN3-249ENST00000636685 THEM6Q8WUY1 208 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 DLX4Q92988 240 aaPredicted RBP11.24□□□□□ -0.61
CLN3-249ENST00000636685 HRASLS5Q96KN8 279 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 FAM110AQ9BQ89 295 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 GAL3ST2Q9H3Q3 398 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 GPR84Q9NQS5 396 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 IL36RNQ9UBH0 155 aa11.24□□□□□ -0.61
CLN3-249ENST00000636685 SLC7A11Q9UPY5 501 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms