RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 IGKV1D-12P01611 117 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 NDUFB7P17568 137 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 AMY2BP19961 511 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 RSU1Q15404 277 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 SSX1Q16384 188 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 DGUOKQ16854 277 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 CRIP3Q6Q6R5 217 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 UNQ9370/PRO34162Q6UXP9 181 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 TSPAN14Q8NG11 270 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 H1FXQ92522 213 aaKnown RBP15.01□□□□□ -0.01
CLN3-239ENST00000628023 NUDT16L1Q9BRJ7 211 aaKnown RBP15.01□□□□□ -0.01
CLN3-239ENST00000628023 MMP26Q9NRE1 261 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 NDUFB11Q9NX14 153 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 POLR3KQ9Y2Y1 108 aaPredicted RBP15.01□□□□□ -0.01
CLN3-239ENST00000628023 WNK2Q9Y3S1 2297 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 ARHGAP32A7KAX9 2087 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 DOCK11Q5JSL3 2073 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 A0A087WXM4 84 aa15□□□□□ -0.01
CLN3-239ENST00000628023 IGHV2-70DA0A0C4DH43 119 aa15□□□□□ -0.01
CLN3-239ENST00000628023 MEGF11A6BM72 1044 aa15□□□□□ -0.01
CLN3-239ENST00000628023 J3QLI3 93 aa15□□□□□ -0.01
CLN3-239ENST00000628023 SC5DO75845 299 aa15□□□□□ -0.01
CLN3-239ENST00000628023 ARL6IP5O75915 188 aa15□□□□□ -0.01
CLN3-239ENST00000628023 UCHL1P09936 223 aa15□□□□□ -0.01
CLN3-239ENST00000628023 PTGFRP43088 359 aa15□□□□□ -0.01
CLN3-239ENST00000628023 FABP5Q01469 135 aa15□□□□□ -0.01
CLN3-239ENST00000628023 FGFRL1Q8N441 504 aa15□□□□□ -0.01
CLN3-239ENST00000628023 ZNF561Q8N587 486 aa15□□□□□ -0.01
CLN3-239ENST00000628023 CD177Q8N6Q3 437 aa15□□□□□ -0.01
CLN3-239ENST00000628023 ASCC1Q8N9N2 400 aaKnown RBP15□□□□□ -0.01
CLN3-239ENST00000628023 ZNRF1Q8ND25 227 aa15□□□□□ -0.01
CLN3-239ENST00000628023 PXT1Q8NFP0 134 aa15□□□□□ -0.01
CLN3-239ENST00000628023 RAB40AQ8WXH6 277 aa15□□□□□ -0.01
CLN3-239ENST00000628023 PHYHIPQ92561 330 aa15□□□□□ -0.01
CLN3-239ENST00000628023 SDSLQ96GA7 329 aa15□□□□□ -0.01
CLN3-239ENST00000628023 MRI1Q9BV20 369 aa15□□□□□ -0.01
CLN3-239ENST00000628023 RHOFQ9HBH0 211 aa15□□□□□ -0.01
CLN3-239ENST00000628023 HMG20AQ9NP66 347 aa15□□□□□ -0.01
CLN3-239ENST00000628023 IL36RNQ9UBH0 155 aa15□□□□□ -0.01
CLN3-239ENST00000628023 ING4Q9UNL4 249 aa15□□□□□ -0.01
CLN3-239ENST00000628023 GSTK1Q9Y2Q3 226 aa15□□□□□ -0.01
CLN3-239ENST00000628023 SF3B6Q9Y3B4 125 aaKnown RBP15□□□□□ -0.01
CLN3-239ENST00000628023 C22orf46C9J442 243 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 CDRT1O95170 752 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 ECDO95905 644 aaPredicted RBP14.99□□□□□ -0.01
CLN3-239ENST00000628023 HAND1O96004 215 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 SFTPBP07988 381 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 SRMP19623 302 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 BMXP51813 675 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 COL10A1Q03692 680 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 SPIN3Q5JUX0 258 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 AWAT2Q6E213 333 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 TMEM91Q6ZNR0 172 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 BTN2A1Q7KYR7 527 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 OR10K1Q8NGX5 313 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 MUL1Q969V5 352 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 METTL9Q9H1A3 318 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 C7orf69Q9H7B7 122 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 ZNF696Q9H7X3 374 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 MRPS28Q9Y2Q9 187 aaKnown RBP14.99□□□□□ -0.01
CLN3-239ENST00000628023 MAB21L2Q9Y586 359 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 INSIG2Q9Y5U4 225 aa14.99□□□□□ -0.01
CLN3-239ENST00000628023 HAX1O00165 279 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 GPR37O15354 613 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 TCF21O43680 179 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 HTR3BO95264 441 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 CSTBP04080 98 aaKnown RBP14.98□□□□□ -0.01
CLN3-239ENST00000628023 CHRM2P08172 466 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 CALRP27797 417 aaKnown RBP14.98□□□□□ -0.01
CLN3-239ENST00000628023 DUSP1P28562 367 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 MTNR1BP49286 362 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 GLT8D1Q68CQ7 371 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 C1QL2Q7Z5L3 287 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 CDH26Q8IXH8 852 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 TEX29Q8N6K0 151 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 CNTD2Q9H8S5 307 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 EXOSC4Q9NPD3 245 aaKnown RBP14.98□□□□□ -0.01
CLN3-239ENST00000628023 METRNQ9UJH8 293 aa14.98□□□□□ -0.01
CLN3-239ENST00000628023 SH2D1BO14796 132 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 FCN3O75636 299 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 SERPINA2P20848 420 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 GABRR1P24046 479 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 GP2P55259 537 aaKnown RBP14.97□□□□□ -0.01
CLN3-239ENST00000628023 CAV3P56539 151 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 FGF12P61328 243 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 C11orf91Q3C1V1 193 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 SLC22A6Q4U2R8 563 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 LRRTM1Q86UE6 522 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 FOXRED1Q96CU9 486 aaPredicted RBP14.97□□□□□ -0.01
CLN3-239ENST00000628023 NR1H4Q96RI1 486 aaPredicted RBP14.97□□□□□ -0.01
CLN3-239ENST00000628023 TMPRSS13Q9BYE2 586 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 PPIL3Q9H2H8 161 aaKnown RBP14.97□□□□□ -0.01
CLN3-239ENST00000628023 RPUSD1Q9UJJ7 312 aaKnown RBP14.97□□□□□ -0.01
CLN3-239ENST00000628023 AUP1Q9Y679 476 aa14.97□□□□□ -0.01
CLN3-239ENST00000628023 A0A1W2PQ09 198 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 SIRPB1O00241 398 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 ZNF780AO75290 641 aaPredicted RBP14.96□□□□□ -0.01
CLN3-239ENST00000628023 LIPFP07098 398 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 ZNF44P15621 663 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 ADRA2CP18825 462 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms