RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PDZD2O15018 2839 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 IGHV3OR15-7A0A075B7D8 119 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 RFPL4AA6NLU0 287 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 OR2AT4A6NND4 320 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 RFPL4AL1F8VTS6 287 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 TNFRSF13BO14836 293 aaPredicted RBP12.01□□□□□ -0.49
UPF1-211ENST00000600868 NDUFA2O43678 99 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 CNPY1Q3B7I2 92 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 PIGYQ3MUY2 71 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 ZNF404Q494X3 552 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 TMEM155Q4W5P6 130 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 STUMQ69YW2 141 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 FAM89BQ8N5H3 189 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 C19orf18Q8NEA5 215 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 DEFB108BQ8NET1 73 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 ANGPTL6Q8NI99 470 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 PIMREGQ9BSJ6 248 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 URM1Q9BTM9 101 aaKnown RBP12.01□□□□□ -0.49
UPF1-211ENST00000600868 DNTTIP1Q9H147 329 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 LPAR5Q9H1C0 372 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 ZNF222Q9UK12 451 aa12.01□□□□□ -0.49
UPF1-211ENST00000600868 IGKV1D-17A0A075B6S4 117 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A10PA6NDY2 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A18PA6NE21 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A16PA6NEW6 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A20PA6NIJ5 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A8PA6NJQ4 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A7PA6NKC0 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A22PA8MWA6 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A12PA8MX19 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A5PA8MXJ8 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A23PA8MXZ1 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 VWC2LB2RUY7 222 aa12□□□□□ -0.49
UPF1-211ENST00000600868 SH2D1BO14796 132 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A15PP0C7V4 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A13PP0C7W8 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A14PP0C7W9 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FAM90A24PP0C7X0 464 aa12□□□□□ -0.49
UPF1-211ENST00000600868 CPT2P23786 658 aa12□□□□□ -0.49
UPF1-211ENST00000600868 PRDX2P32119 198 aa12□□□□□ -0.49
UPF1-211ENST00000600868 EFNB2P52799 333 aa12□□□□□ -0.49
UPF1-211ENST00000600868 PLA2G7Q13093 441 aa12□□□□□ -0.49
UPF1-211ENST00000600868 CLEC12BQ2HXU8 276 aa12□□□□□ -0.49
UPF1-211ENST00000600868 MPV17LQ2QL34 196 aa12□□□□□ -0.49
UPF1-211ENST00000600868 AVPI1Q5T686 147 aa12□□□□□ -0.49
UPF1-211ENST00000600868 ATPAF1Q5TC12 328 aaPredicted RBP12□□□□□ -0.49
UPF1-211ENST00000600868 Q6P435 159 aa12□□□□□ -0.49
UPF1-211ENST00000600868 OR5T2Q8NGG2 359 aa12□□□□□ -0.49
UPF1-211ENST00000600868 MCFD2Q8NI22 146 aa12□□□□□ -0.49
UPF1-211ENST00000600868 FOXC2Q99958 501 aa12□□□□□ -0.49
UPF1-211ENST00000600868 TMEM246Q9BRR3 403 aa12□□□□□ -0.49
UPF1-211ENST00000600868 IFT22Q9H7X7 185 aa12□□□□□ -0.49
UPF1-211ENST00000600868 COMMD3Q9UBI1 195 aa12□□□□□ -0.49
UPF1-211ENST00000600868 ISPDA4D126 451 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 METTL21EPA6NDL7 271 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 H3BUI4 141 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 GEMIN2O14893 280 aaKnown RBP11.99□□□□□ -0.49
UPF1-211ENST00000600868 HAND1O96004 215 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 GYPAP02724 150 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 LMO1P25800 156 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 DUSP1P28562 367 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 NR4A2P43354 598 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 ART1P52961 327 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SNU13P55769 128 aaKnown RBP11.99□□□□□ -0.49
UPF1-211ENST00000600868 TAF9Q16594 264 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 UBE2NLQ5JXB2 153 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 Q5PR19 223 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SHEQ5VZ18 495 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 DCDC5Q6ZRR9 648 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SPICQ8N5J4 248 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 CD177Q8N6Q3 437 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SAMD12Q8N8I0 201 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 CHST4Q8NCG5 386 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SLC25A38Q96DW6 304 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 SDSLQ96GA7 329 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 BPESC1Q9GZL8 116 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 ABCG5Q9H222 651 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 MMP27Q9H306 513 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 RHBDL2Q9NX52 303 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 KAAG1Q9UBP8 84 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 OR14J1Q9UGF5 321 aa11.99□□□□□ -0.49
UPF1-211ENST00000600868 IGHV4-30-2A0A087WSY4 118 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 A0A0A6YYD4 124 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 CTDSP2O14595 271 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 DEGS1O15121 323 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 SCGNO76038 276 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 OR2H2O95918 312 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 APOA1P02647 267 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 CHRM2P08172 466 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 SLC25A16P16260 332 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 AMY2BP19961 511 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 GABRR1P24046 479 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 GABRA2P47869 451 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 IKZF1Q13422 519 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 ZNF788Q6ZQV5 615 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 SLC36A1Q7Z2H8 476 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 KRTAP1-3Q8IUG1 177 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 OR56B1Q8NGI3 324 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 RAB40AQ8WXH6 277 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 GAL3ST1Q99999 423 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms