RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 KCNS2Q9ULS6 477 aa13.78□□□□□ -0.2
SHKBP1-219ENST00000599575 A0A0G2JMP0 313 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 A0A0X1KG70 313 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 KIAA1324LA8MWY0 1029 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 F8VVB4 439 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 F8VWA3 439 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 SLC17A2O00624 439 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 DVL1O14640 695 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 SLC22A1O15245 554 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 LY6G6DO95868 133 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 AMY2BP19961 511 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 LMO1P25800 156 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 HTR2CP28335 458 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 RBMXP38159 391 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 HOXA4Q00056 320 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 AWAT2Q6E213 333 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 C22orf42Q6IC83 251 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 RNF144BQ7Z419 303 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 C1QL2Q7Z5L3 287 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 OR4M2Q8NGB6 313 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 OR13F1Q8NGS4 319 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 YIPF6Q96EC8 236 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 CTSZQ9UBR2 303 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 ING4Q9UNL4 249 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 MAB21L2Q9Y586 359 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 V9GY05 133 aa13.77□□□□□ -0.21
SHKBP1-219ENST00000599575 LOC105371242A0A075B767 164 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 TRBV23-1A0A0A0MS06 115 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A10PA6NDY2 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A18PA6NE21 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A16PA6NEW6 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A20PA6NIJ5 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A8PA6NJQ4 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A7PA6NKC0 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 A8MV72 311 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A22PA8MWA6 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A12PA8MX19 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A5PA8MXJ8 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A23PA8MXZ1 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 K7N7A8 449 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 BPNT1O95861 308 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 HAND1O96004 215 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A15PP0C7V4 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A13PP0C7W8 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A14PP0C7W9 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM90A24PP0C7X0 464 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 RAB3BP20337 219 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 GADD45AP24522 165 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 GLIPR1L1Q6UWM5 242 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 BTNL3Q6UXE8 466 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 OSR2Q8N2R0 312 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 CD177Q8N6Q3 437 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM216BQ8N7L0 139 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 RAB40AQ8WXH6 277 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 SNX22Q96L94 193 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 CHCHD6Q9BRQ6 235 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 OR51E2Q9H255 320 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 IFT22Q9H7X7 185 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 HIF1ANQ9NWT6 349 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 SLC25A10Q9UBX3 287 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 OR14J1Q9UGF5 321 aa13.76□□□□□ -0.21
SHKBP1-219ENST00000599575 MTORP42345 2549 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 CSPG4Q6UVK1 2322 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 KIR2DS1A0A191URI9 304 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 ENSAO43768 121 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 AIREO43918 545 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 CDRT1O95170 752 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 HTR3BO95264 441 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 ZNF16P17020 682 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 ZFP36P26651 326 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 SEC61A1P61619 476 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 LCN2P80188 198 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 FAM189A2Q15884 450 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 MPV17LQ2QL34 196 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 OR4D6Q8NGJ1 314 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 KCNG3Q8TAE7 436 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 C8orf46Q8TAG6 207 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 PLGRKTQ9HBL7 147 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 SPACA1Q9HBV2 294 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 FBLN5Q9UBX5 448 aa13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 AK6Q9Y3D8 172 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-219ENST00000599575 FUOMA2VDF0 154 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 PHF1O43189 567 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 ZNF737O75373 536 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 TK1P04183 234 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 TFAP2AP05549 437 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 PPIAL4GP0DN37 164 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 ALDH3B2P48448 385 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 KCNJ3P48549 501 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 PAX2Q02962 417 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 RAB11BQ15907 218 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 SLC22A6Q4U2R8 563 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 DCAF12L2Q5VW00 463 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 OR2W3Q7Z3T1 314 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 CROCCP3Q8IVE0 287 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 OR8H2Q8N162 312 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 ZNRF1Q8ND25 227 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 TMEM185AQ8NFB2 350 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 ST8SIA4Q92187 359 aa13.74□□□□□ -0.21
SHKBP1-219ENST00000599575 DACT3Q96B18 629 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms