RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 FAM157CP0CG43 387 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 MMP9P14780 707 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 NDUFB7P17568 137 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF93P35789 620 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 PTGFRP43088 359 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 DLX1P56177 255 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 CAV3P56539 151 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 RIPPLY3P57055 190 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 FGF12P61328 243 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 ARF6P62330 175 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 PPP3R1P63098 170 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 FABP5Q01469 135 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 PRB3Q04118 309 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF146Q15072 292 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 LRRC10Q5BKY1 277 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 CD276Q5ZPR3 534 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 Q6P435 159 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF773Q6PK81 442 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 TMEM185AQ8NFB2 350 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 Q8NFD4 153 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 PXT1Q8NFP0 134 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 TBX15Q96SF7 602 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 GPER1Q99527 375 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 GFI1Q99684 422 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 CNTD2Q9H8S5 307 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 SEBOXQ9HB31 216 aaPredicted RBP11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 LPAR3Q9UBY5 353 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 GSTK1Q9Y2Q3 226 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 CUBNO60494 3623 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 IGHV3OR16-10A0A075B7F0 116 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 A0A1W2PP11 408 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 K7N7A8 449 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 MAGEB3O15480 346 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 ENSAO43768 121 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 HAND1O96004 215 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 CYB5AP00167 134 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 TK1P04183 234 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 SRD5A1P18405 259 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 METAP1DQ6UB28 335 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF561Q8N587 486 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 Q8N7P7 452 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 OR4M1Q8NGD0 313 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 OR4D6Q8NGJ1 314 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 C8orf46Q8TAG6 207 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 H1FXQ92522 213 aaKnown RBP11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 CYYR1Q96J86 154 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 C1orf147Q96MC9 270 aaPredicted RBP11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 SIRPDQ9H106 197 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 C19orf12Q9NSK7 152 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 ING4Q9UNL4 249 aa11.71□□□□□ -0.53
SHKBP1-217ENST00000598558 SHISA3A0PJX4 238 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 MEX3AA1L020 520 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 ECDO95905 644 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 CHRM2P08172 466 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 PPIAL4GP0DN37 164 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 IGHV4-38-2P0DP08 117 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 CD37P11049 281 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 HNF1AP20823 631 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 SRP14P37108 136 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 ERVFRD-1P60508 538 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 SRSF2Q01130 221 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 KCTD21Q4G0X4 260 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 ELP2Q6IA86 826 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 BTNL3Q6UXE8 466 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 Q8IYB0 196 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 BCL6BQ8N143 479 aaPredicted RBP11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 SVOPQ8N4V2 548 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 OR4S1Q8NGB4 309 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 MUL1Q969V5 352 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 UPRTQ96BW1 309 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 NAV3Q8IVL0 2385 aa11.7□□□□□ -0.54
SHKBP1-217ENST00000598558 SIRPB1O00241 398 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 GPR37O15354 613 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 HTR3BO95264 441 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 OR2H2O95918 312 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 SRMP19623 302 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 GABRA5P31644 462 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 CAPZA1P52907 286 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 C11orf91Q3C1V1 193 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 PIGYQ3MUY2 71 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 HSD17B12Q53GQ0 312 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 TMEM200BQ69YZ2 307 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 JAGN1Q8N5M9 183 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 C11orf42Q8N5U0 333 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 ASCC1Q8N9N2 400 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 C22orf15Q8WYQ4 148 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 WDFY2Q96P53 400 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 NR1H4Q96RI1 486 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 MRI1Q9BV20 369 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 FAM192AQ9GZU8 254 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 CHST6Q9GZX3 395 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 CKLFQ9UBR5 152 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 ZNF69Q9UC07 566 aa11.69□□□□□ -0.54
SHKBP1-217ENST00000598558 A0A0G2JK05 382 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 RGS9O75916 674 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 LIPFP07098 398 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 LMO1P25800 156 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 MAPK3P27361 379 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 PSMB9P28065 219 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 OR3A1P47881 315 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms