RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 EDDM3BP56851 147 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 PROK1P58294 105 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 MEF2CQ06413 473 aaPredicted RBP12.25□□□□□ -0.45
LIG1-215ENST00000597901 RAB40BQ12829 278 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 ZNF146Q15072 292 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 KLHL22Q53GT1 634 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 DHRS7BQ6IAN0 325 aaPredicted RBP12.25□□□□□ -0.45
LIG1-215ENST00000597901 SLC35E4Q6ICL7 350 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 TREML4Q6UXN2 200 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 ZNF782Q6ZMW2 699 aaPredicted RBP12.25□□□□□ -0.45
LIG1-215ENST00000597901 RNF144BQ7Z419 303 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 OR8H2Q8N162 312 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 OR52I1Q8NGK6 324 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 OR13C3Q8NGS6 347 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 SPSB1Q96BD6 273 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 OPALINQ96PE5 141 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 CITED1Q99966 193 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 PPA2Q9H2U2 334 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 INPP5EQ9NRR6 644 aa12.25□□□□□ -0.45
LIG1-215ENST00000597901 TRBV2A0A0J9YWF9 115 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 FAM90A8PA6NJQ4 464 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 OCM2P0CE71 109 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 OCMP0CE72 109 aaPredicted RBP12.24□□□□□ -0.45
LIG1-215ENST00000597901 PRKACAP17612 351 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 PEX2P28328 305 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 BMXP51813 675 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 LY6EQ16553 131 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 AANATQ16613 207 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 OR13C9Q8NGT0 318 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 APH1BQ8WW43 257 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 RFT1Q96AA3 541 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 ZCCHC4Q9H5U6 513 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 HMG20AQ9NP66 347 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 GLS2Q9UI32 602 aa12.24□□□□□ -0.45
LIG1-215ENST00000597901 IGKV1-12A0A0C4DH73 117 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 hADV38S2A0JD32 116 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 PSPNO60542 156 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 ALX3O95076 343 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 ZFPL1O95159 310 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 IGKV1D-12P01611 117 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 RPSAP08865 295 aaKnown RBP12.23□□□□□ -0.45
LIG1-215ENST00000597901 GABRR1P24046 479 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 GBX2P52951 348 aaPredicted RBP12.23□□□□□ -0.45
LIG1-215ENST00000597901 MRPL28Q13084 256 aaKnown RBP12.23□□□□□ -0.45
LIG1-215ENST00000597901 GRK1Q15835 563 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 LRRC75BQ2VPJ9 315 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 LPCAT4Q643R3 524 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 BRICD5Q6PL45 260 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 CRIP3Q6Q6R5 217 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 LHFPL4Q7Z7J7 247 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 SERPINA12Q8IW75 414 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 ZNF555Q8NEP9 628 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 OR4S1Q8NGB4 309 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 OR5D14Q8NGL3 314 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 OR13D1Q8NGV5 346 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 PPP1R35Q8TAP8 253 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 PIFOQ8TCI5 191 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 SPACA5Q96QH8 159 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 CHST6Q9GZX3 395 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 NEK6Q9HC98 313 aa12.23□□□□□ -0.45
LIG1-215ENST00000597901 FGF20Q9NP95 211 aaPredicted RBP12.23□□□□□ -0.45
LIG1-215ENST00000597901 TMEM212A6NML5 194 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SH2D1BO14796 132 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 MGST3O14880 152 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 WBP4O75554 376 aaKnown RBP12.22□□□□□ -0.45
LIG1-215ENST00000597901 KDM4BO94953 1096 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 RBP4P02753 201 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 LIMS3P0CW19 117 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 LIMS4P0CW20 117 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 IGHV1-8P0DP01 117 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SNU13P55769 128 aaKnown RBP12.22□□□□□ -0.45
LIG1-215ENST00000597901 EDDM3AQ14507 147 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SMN1Q16637 294 aaKnown RBP12.22□□□□□ -0.45
LIG1-215ENST00000597901 SPIN3Q5JUX0 258 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 ASPHD2Q6ICH7 369 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 TCF23Q7RTU1 214 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SAXO1Q8IYX7 474 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 TPRX1Q8N7U7 411 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 OR11H6Q8NGC7 330 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 OR5AK2Q8NH90 309 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 MALSU1Q96EH3 234 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 ZNF714Q96N38 554 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 RDH12Q96NR8 316 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 PDCD1LG2Q9BQ51 273 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SMPD3Q9NY59 655 aaPredicted RBP12.22□□□□□ -0.45
LIG1-215ENST00000597901 FBLN5Q9UBX5 448 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 GSTK1Q9Y2Q3 226 aa12.22□□□□□ -0.45
LIG1-215ENST00000597901 SIRPB1O00241 398 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 ARG1P05089 322 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 CCDC159P0C7I6 412 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 TMEM225BP0DP42 221 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 LMO1P25800 156 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 ERP29P30040 261 aaKnown RBP12.21□□□□□ -0.45
LIG1-215ENST00000597901 KIR2DS4P43632 304 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 RAB13P51153 203 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 GTF2A1P52655 376 aaPredicted RBP12.21□□□□□ -0.45
LIG1-215ENST00000597901 DYNAPQ8N1N2 210 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 PARP16Q8N5Y8 322 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 OR5D18Q8NGL1 313 aa12.21□□□□□ -0.45
LIG1-215ENST00000597901 STMN2Q93045 179 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms