RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 OR5D18Q8NGL1 313 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 OR13C3Q8NGS6 347 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 SPSB1Q96BD6 273 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 SSX3Q99909 188 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 CHST6Q9GZX3 395 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 MEGF9Q9H1U4 602 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 PPA2Q9H2U2 334 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 C16orf95Q9H693 158 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 FAM118AQ9NWS6 357 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 ERVK13-1Q9NX77 482 aa10.59□□□□□ -0.71
LIG1-212ENST00000596549 FAM90A8PA6NJQ4 464 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 SNTNA6NMZ2 147 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 EBAG9O00559 213 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 CHST1O43916 411 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 MPZL2O60487 215 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 WBP4O75554 376 aaKnown RBP10.58□□□□□ -0.72
LIG1-212ENST00000596549 ZFPL1O95159 310 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 RBP4P02753 201 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 PRKACAP17612 351 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 PRKACBP22694 351 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 OR3A1P47881 315 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 MTCP1P56278 107 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 RAB40BQ12829 278 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 EDDM3AQ14507 147 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 LY6EQ16553 131 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 SMN1Q16637 294 aaKnown RBP10.58□□□□□ -0.72
LIG1-212ENST00000596549 LRRC75BQ2VPJ9 315 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 ZNF626Q68DY1 528 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 XAF1Q6GPH4 301 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 ASPHD2Q6ICH7 369 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 GDPD3Q7L5L3 318 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 Q8IYB0 196 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 FAM58AQ8N1B3 248 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 ZNF676Q8N7Q3 588 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 OR4S1Q8NGB4 309 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 PPP1R35Q8TAP8 253 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 PIFOQ8TCI5 191 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 RGP1Q92546 391 aaPredicted RBP10.58□□□□□ -0.72
LIG1-212ENST00000596549 SNX22Q96L94 193 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 PDCD1LG2Q9BQ51 273 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 SEBOXQ9HB31 216 aaPredicted RBP10.58□□□□□ -0.72
LIG1-212ENST00000596549 MRPS18AQ9NVS2 196 aaKnown RBP10.58□□□□□ -0.72
LIG1-212ENST00000596549 MGAM2Q2M2H8 2515 aa10.58□□□□□ -0.72
LIG1-212ENST00000596549 KCNAB3O43448 404 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 KDM4BO94953 1096 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 MT-ND2P03891 347 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 LIMS3P0CW19 117 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 LIMS4P0CW20 117 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 ZNF728P0DKX0 622 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 IGHV1-8P0DP01 117 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 TGFBR2P37173 567 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 ZP1P60852 638 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 PDZK1IP1Q13113 114 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 GRK1Q15835 563 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 ZSCAN26Q16670 478 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 SPIN3Q5JUX0 258 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 RPS4Y2Q8TD47 263 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 ZNF714Q96N38 554 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 HEXA-AS1Q9H8Q6 139 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 HMG20AQ9NP66 347 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 INPP5EQ9NRR6 644 aa10.57□□□□□ -0.72
LIG1-212ENST00000596549 SMPD3Q9NY59 655 aaPredicted RBP10.57□□□□□ -0.72
LIG1-212ENST00000596549 hCG_1809904A0A1W2PP81 198 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 A0A1W2PPE2 198 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 A0A1W2PR64 198 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 A0A1W2PRV1 198 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 TMEM212A6NML5 194 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 SIRPB1O00241 398 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 SULT1B1O43704 296 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 CLIC3O95833 236 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 FADS2O95864 444 aaKnown RBP10.56□□□□□ -0.72
LIG1-212ENST00000596549 OR2H2O95918 312 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 GABRR1P24046 479 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 GTF2A1P52655 376 aaPredicted RBP10.56□□□□□ -0.72
LIG1-212ENST00000596549 MEF2CQ06413 473 aaPredicted RBP10.56□□□□□ -0.72
LIG1-212ENST00000596549 IL18R1Q13478 541 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 AANATQ16613 207 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 PLA1AQ53H76 456 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 SLC35E4Q6ICL7 350 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 PARP16Q8N5Y8 322 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 OR11H6Q8NGC7 330 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 Q96MT0 163 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 JAM3Q9BX67 310 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 COMMD4Q9H0A8 199 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 ZCCHC4Q9H5U6 513 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 FGF20Q9NP95 211 aaPredicted RBP10.56□□□□□ -0.72
LIG1-212ENST00000596549 GSTK1Q9Y2Q3 226 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 SIGLEC9Q9Y336 463 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 TBL2Q9Y4P3 447 aaKnown RBP10.56□□□□□ -0.72
LIG1-212ENST00000596549 LINC00312Q9Y6C7 94 aa10.56□□□□□ -0.72
LIG1-212ENST00000596549 MMP23AO75900 390 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 BAG2O95816 211 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 TSPAN15O95858 294 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 CYB5AP00167 134 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 ARG1P05089 322 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 JUNBP17275 347 aaPredicted RBP10.55□□□□□ -0.72
LIG1-212ENST00000596549 PEX2P28328 305 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 EFNB2P52799 333 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 P2RX3P56373 397 aa10.55□□□□□ -0.72
LIG1-212ENST00000596549 ZNF691Q5VV52 312 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms