RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ACSM1Q08AH1 577 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 IKZF1Q13422 519 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 IRF3Q14653 427 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 STUMQ69YW2 141 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 Q6ZSV7 163 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 LHFPL2Q6ZUX7 228 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 ANGPTL5Q86XS5 388 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 CALHM1Q8IU99 346 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 PNKDQ8N490 385 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 LY6G5BQ8NDX9 201 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 OR13C9Q8NGT0 318 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 SGCDQ92629 289 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 GHSRQ92847 366 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 PGLYRP3Q96LB9 341 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 OPALINQ96PE5 141 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 DNTTIP1Q9H147 329 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 ZCCHC4Q9H5U6 513 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 SNTG1Q9NSN8 517 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 ONECUT1Q9UBC0 465 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 NLKQ9UBE8 527 aa10.25□□□□□ -0.77
UPF1-203ENST00000594504 SULT1B1O43704 296 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 ECDO95905 644 aaPredicted RBP10.24□□□□□ -0.77
UPF1-203ENST00000594504 CELP19835 753 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 SOX2P48431 317 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 MTCP1P56278 107 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 KLRD1Q13241 179 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 SPHARQ15513 63 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 TAF9Q16594 264 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 SMIM21Q3B7S5 101 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 YIF1BQ5BJH7 314 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 ATPAF1Q5TC12 328 aaPredicted RBP10.24□□□□□ -0.77
UPF1-203ENST00000594504 PRSS48Q7RTY5 328 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 SLC36A1Q7Z2H8 476 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 LDLRAD3Q86YD5 345 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 ZFP41Q8N8Y5 198 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 TMEM106AQ96A25 262 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 NRIP2Q9BQI9 281 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 LSM2Q9Y333 95 aaKnown RBP10.24□□□□□ -0.77
UPF1-203ENST00000594504 KPTNQ9Y664 436 aa10.24□□□□□ -0.77
UPF1-203ENST00000594504 TRBV5-5A0A0J9YX44 114 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 PNMA8CA0A1B0GUJ8 204 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 NKX6-3A6NJ46 265 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 OR2AT4A6NND4 320 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 RNASEK-C17orf49H0YIS7 233 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 NDUFB3O43676 98 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 CLPXO76031 633 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 NXPH2O95156 264 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 CYB5AP00167 134 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 RAB3AP20336 220 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 PROK1P58294 105 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 ERVK11-1P61568 191 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 DOC2BQ14184 412 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 C11orf91Q3C1V1 193 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 Q499Y3 187 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 HIST2H2BDQ6DRA6 164 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 ACP7Q6ZNF0 438 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 SLC25A26Q70HW3 274 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 C1QL4Q86Z23 238 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 MKXQ8IYA7 352 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 Q8N7P7 452 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 ANGPTL6Q8NI99 470 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 H1FXQ92522 213 aaKnown RBP10.23□□□□□ -0.77
UPF1-203ENST00000594504 CPNE2Q96FN4 548 aaPredicted RBP10.23□□□□□ -0.77
UPF1-203ENST00000594504 MED30Q96HR3 178 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 CEP19Q96LK0 163 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 ZNF488Q96MN9 340 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 OR5M11Q96RB7 305 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 DCTN5Q9BTE1 182 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 CCDC90BQ9GZT6 254 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 HES4Q9HCC6 221 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 FAM96BQ9Y3D0 163 aa10.23□□□□□ -0.77
UPF1-203ENST00000594504 IGKV1D-17A0A075B6S4 117 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 M0QZ24 198 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 TIMM23O14925 209 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 SIGLEC5O15389 551 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 TSPAN15O95858 294 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 HCKP08631 526 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 PSG2P11465 335 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 EEF1B2P24534 225 aaKnown RBP10.22□□□□□ -0.77
UPF1-203ENST00000594504 POU3F4P49335 361 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 GABARAPL2P60520 117 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 RPS11P62280 158 aaKnown RBP eCLIP10.22□□□□□ -0.77
UPF1-203ENST00000594504 PDZK1IP1Q13113 114 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 MED22Q15528 200 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 ZNF529Q6P280 563 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 ZNF788Q6ZQV5 615 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 Q8IYB0 196 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 ZSCAN4Q8NAM6 433 aaPredicted RBP10.22□□□□□ -0.77
UPF1-203ENST00000594504 OR13C5Q8NGS8 318 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 THRSPQ92748 146 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 SLAMF9Q96A28 289 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 MMP27Q9H306 513 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 DPAGT1Q9H3H5 408 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 TCF7L1Q9HCS4 588 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 TAS2R4Q9NYW5 299 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 MTCH1Q9NZJ7 389 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 ZNRD1Q9P1U0 126 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 ZNF222Q9UK12 451 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 CMYA5Q8N3K9 4069 aa10.22□□□□□ -0.77
UPF1-203ENST00000594504 NPFFO15130 113 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms