RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HLXQ14774 488 aaPredicted RBP8.58□□□□□ -1.04
LIG3-216ENST00000593099 ZNF124Q15973 351 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 TEX30Q5JUR7 227 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 SAPCD1Q5SSQ6 148 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 C10orf128Q5T292 105 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 TCTE3Q8IZS6 198 aa8.58□□□□□ -1.04
LIG3-216ENST00000593099 TMEM82A0PJX8 343 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 TMEM210A6NLX4 147 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 GABARAPH6UMI1 98 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 NGFP01138 241 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 IGHMP01871 453 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 OR4A8P0C604 315 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 SNCAP37840 140 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 GABRA6Q16445 453 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 FNDC7Q5VTL7 733 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 ZNF808Q8N4W9 903 aaPredicted RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 SPICQ8N5J4 248 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 TMEM54Q969K7 222 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 YIPF6Q96EC8 236 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 PLEKHF2Q9H8W4 249 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 OR2S2Q9NQN1 319 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 M0QYG6 137 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 CLDN14O95500 239 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 PTBP1P26599 531 aaKnown RBP eCLIP8.57□□□□□ -1.04
LIG3-216ENST00000593099 KIAA0141Q14154 515 aaPredicted RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 SHISA5Q8N114 240 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 MRPS24Q96EL2 167 aaKnown RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 FRRS1LQ9P0K9 344 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 SPRR3Q9UBC9 169 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 RTTNQ86VV8 2226 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 COL4A4P53420 1690 aaPredicted RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 ERVH48-1M5A8F1 160 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 ELK1P19419 428 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 PSMB1P20618 241 aaKnown RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 ETV6P41212 452 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 RPS4XP62701 263 aaKnown RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 MFGE8Q08431 387 aaPredicted RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 NUDCD2Q8WVJ2 157 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 GALMQ96C23 342 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 PURGQ9UJV8 347 aaKnown RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 SLC33A1O00400 549 aaPredicted RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 SNRNP70P08621 437 aaKnown RBP8.57□□□□□ -1.04
LIG3-216ENST00000593099 ADRA2AP08913 450 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 CCL8P80075 99 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 SLC9A3R2Q15599 337 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 OR52N4Q8NGI2 321 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 GPR61Q9BZJ8 451 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 ZNF355PQ9NSJ1 428 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 LAMP3Q9UQV4 416 aa8.57□□□□□ -1.04
LIG3-216ENST00000593099 DOCK9Q9BZ29 2069 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 SC5DO75845 299 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 PCMT1P22061 227 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 CAV2P51636 162 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 FOXO1Q12778 655 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 PNLIPRP3Q17RR3 467 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 FRZBQ92765 325 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 RTN4RQ9BZR6 473 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 OR5V1Q9UGF6 321 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 A0A0U1RQV5 110 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 POM121CA8CG34 1229 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 HLA-AP01891 365 aaKnown RBP8.56□□□□□ -1.04
LIG3-216ENST00000593099 GNB3P16520 340 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 PLA2G5P39877 138 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 RNLSQ5VYX0 342 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 H3F3CQ6NXT2 135 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 PRSS45Q7RTY3 260 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 SLC25A21Q9BQT8 299 aaPredicted RBP8.56□□□□□ -1.04
LIG3-216ENST00000593099 GAL3ST2Q9H3Q3 398 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 MRPS18AQ9NVS2 196 aaKnown RBP8.56□□□□□ -1.04
LIG3-216ENST00000593099 TREM2Q9NZC2 230 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 KIAA1456Q9P272 454 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 LSM5Q9Y4Y9 91 aaKnown RBP8.56□□□□□ -1.04
LIG3-216ENST00000593099 M0R143 59 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 GPR137BO60478 399 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 THY1P04216 161 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 STAG3L3P0CL85 134 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 LYRM7Q5U5X0 104 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 IGF2-ASQ6U949 168 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 OR4A16Q8NH70 328 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 ELOVL1Q9BW60 279 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 CHST6Q9GZX3 395 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 NCOR1P1Q9H4R4 102 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 METTL17Q9H7H0 456 aaPredicted RBP8.56□□□□□ -1.04
LIG3-216ENST00000593099 ESPL1Q14674 2120 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 TMPRSS2O15393 492 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 TCF21O43680 179 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 CNIH1O95406 144 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 HOXB5P09067 269 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 RAB6AP20340 208 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 TRAT1Q6PIZ9 186 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 SCMH1Q96GD3 660 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 ZNF426Q9BUY5 554 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 SMCO4Q9NRQ5 59 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 LHFPL6Q9Y693 200 aa8.56□□□□□ -1.04
LIG3-216ENST00000593099 ICE1Q9Y2F5 2266 aa8.55□□□□□ -1.04
LIG3-216ENST00000593099 PPIAL4EA0A075B759 164 aa8.55□□□□□ -1.04
LIG3-216ENST00000593099 PPIAL4DF5H284 164 aa8.55□□□□□ -1.04
LIG3-216ENST00000593099 SS18L1O75177 396 aaPredicted RBP8.55□□□□□ -1.04
LIG3-216ENST00000593099 PDCD6O75340 191 aa8.55□□□□□ -1.04
LIG3-216ENST00000593099 PPIAL4FP0DN26 164 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms