RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 C17orf107Q6ZR85 190 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 MKXQ8IYA7 352 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 FAM185AQ8N0U4 392 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 FAM58AQ8N1B3 248 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 PIP4P2Q8N4L2 257 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 OR4M1Q8NGD0 313 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 OR52N4Q8NGI2 321 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 DMRTB1Q96MA1 342 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 HMG20AQ9NP66 347 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 LSM2Q9Y333 95 aaKnown RBP16.51■□□□□ 0.23
SS18-218ENST00000581021 TENM1Q9UKZ4 2725 aa16.51■□□□□ 0.23
SS18-218ENST00000581021 A0A1W2PQ09 198 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 GABRPO00591 440 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 MYL12BO14950 172 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 HAND1O96004 215 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 PRKACAP17612 351 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 RAB3AP20336 220 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 UBA52P62987 128 aaKnown RBP16.5■□□□□ 0.23
SS18-218ENST00000581021 ZNF273Q14593 569 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 IRF3Q14653 427 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 PDCD1Q15116 288 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 TCF23Q7RTU1 214 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 Q8IYB0 196 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 C11orf42Q8N5U0 333 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 ASCC1Q8N9N2 400 aaKnown RBP16.5■□□□□ 0.23
SS18-218ENST00000581021 SPATA3Q8NHX4 192 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 OR5M11Q96RB7 305 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 CDCA4Q9BXL8 241 aa16.5■□□□□ 0.23
SS18-218ENST00000581021 TRAV8-7A0A075B6U6 113 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 TRBV5-7A0A0A0MS05 114 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 MEX3AA1L020 520 aaKnown RBP16.49■□□□□ 0.23
SS18-218ENST00000581021 PSPNO60542 156 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 IGFBP3P17936 291 aaPredicted RBP16.49■□□□□ 0.23
SS18-218ENST00000581021 ERVFRD-1P60508 538 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 RPL31P62899 125 aaKnown RBP16.49■□□□□ 0.23
SS18-218ENST00000581021 ZNF146Q15072 292 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 RNLSQ5VYX0 342 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 TMEM200BQ69YZ2 307 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 HCP5Q6MZN7 132 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 SAXO1Q8IYX7 474 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 PNKDQ8N490 385 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 OR14A2Q96R54 314 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 FAM234AQ9H0X4 552 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 VCX3BQ9H321 246 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 DUSP21Q9H596 190 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 NEK6Q9HC98 313 aa16.49■□□□□ 0.23
SS18-218ENST00000581021 M0R1W7 72 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CYB5AP00167 134 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CHRM2P08172 466 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CCL3L1P16619 93 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CELP19835 753 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 TAS2R43P59537 309 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 Q499Y3 187 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 YIF1BQ5BJH7 314 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CMTM4Q8IZR5 234 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 ZFAND2BQ8WV99 257 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 CHST6Q9GZX3 395 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 PRDM13Q9H4Q3 707 aa16.48■□□□□ 0.23
SS18-218ENST00000581021 SEBOXQ9HB31 216 aaPredicted RBP16.48■□□□□ 0.23
SS18-218ENST00000581021 A0A0U1RQK1 487 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 A0A1W2PPK0 400 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 PIN1P1O15428 100 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 CD2P06729 351 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 TMEM225BP0DP42 221 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 CRHBPP24387 322 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 OR3A1P47881 315 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 OR3A4PP47883 348 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 DLX6P56179 175 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 BAMBIQ13145 260 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 INSL4Q14641 139 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 SLC9A3R2Q15599 337 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 SPIN3Q5JUX0 258 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 METAP1DQ6UB28 335 aaPredicted RBP16.47■□□□□ 0.23
SS18-218ENST00000581021 OR8H2Q8N162 312 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 ZSCAN4Q8NAM6 433 aaPredicted RBP16.47■□□□□ 0.23
SS18-218ENST00000581021 OR4S1Q8NGB4 309 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 FAM216AQ8WUB2 273 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 CNBD2Q96M20 576 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 JMJD8Q96S16 334 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 UNKLQ9H9P5 680 aaKnown RBP16.47■□□□□ 0.23
SS18-218ENST00000581021 ERGIC3Q9Y282 383 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 GSTK1Q9Y2Q3 226 aa16.47■□□□□ 0.23
SS18-218ENST00000581021 A0A1W2PRD5 423 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 A0A1W2PRF3 423 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 A0A1W2PRM7 423 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 SIRPB1O00241 398 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 PRTN3P24158 256 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 HSPA13P48723 471 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 BPIFB3P59826 476 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 Q6P435 159 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 RBMS3Q6XE24 437 aaKnown RBP16.46■□□□□ 0.23
SS18-218ENST00000581021 C1orf122Q6ZSJ8 110 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 SATL1Q86VE3 508 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 TPRX1Q8N7U7 411 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 TNFAIP8L1Q8WVP5 186 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 MYDGFQ969H8 173 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 SNX22Q96L94 193 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 DERL3Q96Q80 235 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 MND1Q9BWT6 205 aa16.46■□□□□ 0.23
SS18-218ENST00000581021 METTL8Q9H825 291 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms