RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 C3orf56Q8N813 242 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 OR5D18Q8NGL1 313 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 OR52N1Q8NH53 320 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 RPS4Y2Q8TD47 263 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 GPR148Q8TDV2 347 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 SSMEM1Q8WWF3 244 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 RGP1Q92546 391 aaPredicted RBP16.49■□□□□ 0.23
NUP88-204ENST00000572290 SNX22Q96L94 193 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 NKX1-2Q9UD57 310 aaPredicted RBP16.49■□□□□ 0.23
NUP88-204ENST00000572290 GLS2Q9UI32 602 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 SF3B6Q9Y3B4 125 aaKnown RBP16.49■□□□□ 0.23
NUP88-204ENST00000572290 POMT1Q9Y6A1 747 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 IGKV1-12A0A0C4DH73 117 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 TMEM82A0PJX8 343 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 EFCAB10A6NFE3 127 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 IGKV1D-12P01611 117 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 CALCBP10092 127 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 PIPP12273 146 aaPredicted RBP16.48■□□□□ 0.23
NUP88-204ENST00000572290 SNU13P55769 128 aaKnown RBP16.48■□□□□ 0.23
NUP88-204ENST00000572290 ST3GAL4Q11206 333 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 ZNF273Q14593 569 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 ZNF146Q15072 292 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 SPIN3Q5JUX0 258 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 GDPD3Q7L5L3 318 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 LDLRAD3Q86YD5 345 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 OR8H2Q8N162 312 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 PNKDQ8N490 385 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 HMG20AQ9NP66 347 aa16.48■□□□□ 0.23
NUP88-204ENST00000572290 CNOT2Q9NZN8 540 aaKnown RBP16.48■□□□□ 0.23
NUP88-204ENST00000572290 hCG_1809904A0A1W2PP81 198 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PPE2 198 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PR64 198 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PRV1 198 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 OGG1O15527 345 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 KDM4BO94953 1096 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 CD2P06729 351 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 FBP1P09467 338 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 CCL3L1P16619 93 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 RAB3AP20336 220 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 DUSP1P28562 367 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 EDDM3BP56851 147 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 ACSM1Q08AH1 577 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 KISS1Q15726 138 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 LAIR2Q6ISS4 152 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 HCP5Q6MZN7 132 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 CRIP3Q6Q6R5 217 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 C17orf107Q6ZR85 190 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 SAXO1Q8IYX7 474 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 FBLIM1Q8WUP2 373 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 TFAP2CQ92754 450 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 SMIM19Q96E16 107 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 CHIAQ9BZP6 476 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 PLCXD1Q9NUJ7 323 aa16.47■□□□□ 0.23
NUP88-204ENST00000572290 SIRT4Q9Y6E7 314 aaPredicted RBP16.47■□□□□ 0.23
NUP88-204ENST00000572290 MEIOCA2RUB1 952 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 XPNPEP2O43895 674 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 LALBAP00709 142 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 IGHV4-59P01825 116 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 GABRR1P24046 479 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 SAA4P35542 130 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 C11orf42Q8N5U0 333 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 ZSCAN4Q8NAM6 433 aaPredicted RBP16.46■□□□□ 0.23
NUP88-204ENST00000572290 BPIFB6Q8NFQ5 453 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 PPP1R35Q8TAP8 253 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 DPAGT1Q9H3H5 408 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 HEXA-AS1Q9H8Q6 139 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 RHOFQ9HBH0 211 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 PSORS1C1Q9UIG5 152 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 GSTK1Q9Y2Q3 226 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 ZNF281Q9Y2X9 895 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 PCDHGB5Q9Y5G0 923 aa16.46■□□□□ 0.23
NUP88-204ENST00000572290 DOCK11Q5JSL3 2073 aa16.46■□□□□ 0.22
NUP88-204ENST00000572290 FAM181BA6NEQ2 426 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 MAGEB3O15480 346 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 PAHP00439 452 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 CRYBA1P05813 215 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 TMEM225BP0DP42 221 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 IER3P46695 156 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 ZP1P60852 638 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 EDDM3AQ14507 147 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 GRK1Q15835 563 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 ZNF529Q6P280 563 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 STX19Q8N4C7 294 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 OR52N4Q8NGI2 321 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 TAF15Q92804 592 aaKnown RBP eCLIP16.45■□□□□ 0.22
NUP88-204ENST00000572290 TMEM106AQ96A25 262 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 CPNE2Q96FN4 548 aaPredicted RBP16.45■□□□□ 0.22
NUP88-204ENST00000572290 CHST6Q9GZX3 395 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 EXOSC4Q9NPD3 245 aaKnown RBP16.45■□□□□ 0.22
NUP88-204ENST00000572290 TAS2R4Q9NYW5 299 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 ZNRD1Q9P1U0 126 aa16.45■□□□□ 0.22
NUP88-204ENST00000572290 ERICH4A6NGS2 130 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 SH2D1BO14796 132 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 PSPNO60542 156 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 ERVFRD-1P60508 538 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 MEF2CQ06413 473 aaPredicted RBP16.44■□□□□ 0.22
NUP88-204ENST00000572290 MIDNQ504T8 468 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 DMKNQ6E0U4 476 aaPredicted RBP16.44■□□□□ 0.22
NUP88-204ENST00000572290 ASPHD2Q6ICH7 369 aa16.44■□□□□ 0.22
NUP88-204ENST00000572290 AHSA2Q719I0 299 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms