RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 FBXL14Q8N1E6 418 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 OR2C3Q8N628 320 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 OR2AE1Q8NHA4 323 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 NABP1Q96AH0 204 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 JSRP1Q96MG2 331 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 SH3BGRL3Q9H299 93 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 MRPS17Q9Y2R5 130 aaKnown RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 NCOA6Q14686 2063 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 MYO7BQ6PIF6 2116 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 FAM221AA4D161 298 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 ZNF205O95201 554 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 CDS2O95674 445 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 PNLIPP16233 465 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 NKX2-1P43699 371 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 TGIF1Q15583 401 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 ZNF695Q8IW36 515 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 C20orf196Q8IYI0 205 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 OR52M1Q8NGK5 317 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 FBXO17Q96EF6 278 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 PAPOLGQ9BWT3 736 aaKnown RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 SEBOXQ9HB31 216 aaPredicted RBP9.36□□□□□ -0.91
CCDC40-207ENST00000572253 CA14Q9ULX7 337 aa9.36□□□□□ -0.91
CCDC40-207ENST00000572253 MED12Q93074 2177 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 PDCD6O75340 191 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 TIAF1O95411 115 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 OR8B8Q15620 311 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 OR1F12Q8NHA8 337 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 ZNF391Q9UJN7 358 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 ST3GAL6Q9Y274 331 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 GJE1A6NN92 205 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 GEMIN2O14893 280 aaKnown RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 TCN2P20062 427 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 RPS10P46783 165 aaKnown RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 H3F3AP84243 136 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 SPIN3Q5JUX0 258 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 PPP1R3BQ86XI6 285 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 OR10AD1Q8NGE0 317 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 MSI2Q96DH6 328 aaKnown RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 SPSB2Q99619 263 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 RSRP1Q9BUV0 290 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 LIME1Q9H400 295 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 MIOXQ9UGB7 285 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 ASCC3Q8N3C0 2202 aaKnown RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 A0A1W2PPE3 182 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 K7N7A8 449 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 WRBO00258 174 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 PPP1CCP36873 323 aaKnown RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 HTR5AP47898 357 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 DSCR4P56555 118 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 KIAA0141Q14154 515 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 RSPO1Q2MKA7 263 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 LURAP1LQ8IV03 231 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 TMEM123Q8N131 208 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 SLC35G3Q8N808 338 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 SLAMF9Q96A28 289 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 PLEKHF2Q9H8W4 249 aa9.35□□□□□ -0.91
CCDC40-207ENST00000572253 CHCHD2Q9Y6H1 151 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-207ENST00000572253 CCDC187A0A096LP49 1063 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 MASP2O00187 686 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 FUT6P51993 359 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 CEBPGP53567 150 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 USF2Q15853 346 aaPredicted RBP9.34□□□□□ -0.91
CCDC40-207ENST00000572253 PLCXD3Q63HM9 321 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 DPPA2Q7Z7J5 298 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 DYRK2Q92630 601 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 GNRHR2Q96P88 292 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 UCN2Q96RP3 112 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 ABCA7Q8IZY2 2146 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 C3orf85A0A1B0GTC6 90 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 RBFOX3A6NFN3 312 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 FAM24AA6NFZ4 105 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 CYC1P08574 325 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 AADACP22760 399 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 S100A2P29034 98 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 PIGYQ3MUY2 71 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 TMEM211Q6ICI0 200 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 BRICD5Q6PL45 260 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 WDR5BQ86VZ2 330 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 OR8G5Q8NG78 346 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 OR11L1Q8NGX0 322 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 GNPNAT1Q96EK6 184 aaPredicted RBP9.34□□□□□ -0.91
CCDC40-207ENST00000572253 MARS2Q96GW9 593 aaKnown RBP9.34□□□□□ -0.91
CCDC40-207ENST00000572253 BOD1Q96IK1 185 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 SCRT1Q9BWW7 348 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 TRAV20A0A0B4J274 112 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 MED19A0JLT2 244 aaPredicted RBP9.34□□□□□ -0.91
CCDC40-207ENST00000572253 CCDC85CA6NKD9 419 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 LINC01387J3KSC0 135 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 MPPED1O15442 326 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 PITX3O75364 302 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 IGHV2-5P01817 119 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 CST2P09228 141 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 FUT3P21217 361 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 UBE2KP61086 200 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 AKR1C8PQ5T2L2 129 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 ZNF774Q6NX45 483 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 GPR137CQ8N3F9 429 aa9.34□□□□□ -0.91
CCDC40-207ENST00000572253 USP34Q70CQ2 3546 aa9.33□□□□□ -0.92
CCDC40-207ENST00000572253 TRDCB7Z8K6 153 aa9.33□□□□□ -0.92
CCDC40-207ENST00000572253 OR7C1O76099 320 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms