RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ZCCHC4Q9H5U6 513 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 TRBV2A0A0J9YWF9 115 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 A0A1W2PPH5 198 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 TMEM212A6NML5 194 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 ANKRD65E5RJM6 399 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 NDUFA7O95182 113 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 CYB5AP00167 134 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 PAHP00439 452 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 PRKACAP17612 351 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 PAX6P26367 422 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 SNU13P55769 128 aaKnown RBP14.97□□□□□ -0.01
CLN3-237ENST00000569030 EDDM3BP56851 147 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 ADARB1P78563 741 aaKnown RBP14.97□□□□□ -0.01
CLN3-237ENST00000569030 MRPL28Q13084 256 aaKnown RBP14.97□□□□□ -0.01
CLN3-237ENST00000569030 MIDNQ504T8 468 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 XAF1Q6GPH4 301 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 GDPD3Q7L5L3 318 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 OR5D18Q8NGL1 313 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 OR4F5Q8NH21 305 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 SGMS2Q8NHU3 365 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 SNX22Q96L94 193 aa14.97□□□□□ -0.01
CLN3-237ENST00000569030 SEBOXQ9HB31 216 aaPredicted RBP14.97□□□□□ -0.01
CLN3-237ENST00000569030 C17orf98A8MV24 154 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 PSPNO60542 156 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 OCM2P0CE71 109 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 OCMP0CE72 109 aaPredicted RBP14.96□□□□□ -0.01
CLN3-237ENST00000569030 SRSF4Q08170 494 aaKnown RBP14.96□□□□□ -0.01
CLN3-237ENST00000569030 ZNF146Q15072 292 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 TTC23Q5W5X9 447 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 ZNF782Q6ZMW2 699 aaPredicted RBP14.96□□□□□ -0.01
CLN3-237ENST00000569030 TCF23Q7RTU1 214 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 SERPINA12Q8IW75 414 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 PARP16Q8N5Y8 322 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 PACRGLQ8N7B6 248 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 BEND2Q8NDZ0 799 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 RGP1Q92546 391 aaPredicted RBP14.96□□□□□ -0.01
CLN3-237ENST00000569030 CHST6Q9GZX3 395 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 COMMD4Q9H0A8 199 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 HEXA-AS1Q9H8Q6 139 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 BEX1Q9HBH7 125 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 HMG20AQ9NP66 347 aa14.96□□□□□ -0.01
CLN3-237ENST00000569030 WNK1Q9H4A3 2382 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 ALX3O95076 343 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 CCDC159P0C7I6 412 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 ZNF728P0DKX0 622 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 GABRR1P24046 479 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 COX7A1P24310 79 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 DCKP27707 260 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 BMXP51813 675 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 RPL15P61313 204 aaKnown RBP14.95□□□□□ -0.02
CLN3-237ENST00000569030 EDDM3AQ14507 147 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 OR2G6Q5TZ20 316 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 DHRSXQ8N5I4 330 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 TPRX1Q8N7U7 411 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 OR4S1Q8NGB4 309 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 OR5D14Q8NGL3 314 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 SLITRK2Q9H156 845 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 C8orf4Q9NR00 106 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 VPREB3Q9UKI3 123 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 DHDHQ9UQ10 334 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 GSTK1Q9Y2Q3 226 aa14.95□□□□□ -0.02
CLN3-237ENST00000569030 SIRT4Q9Y6E7 314 aaPredicted RBP14.95□□□□□ -0.02
CLN3-237ENST00000569030 A0A1B0GUS0 222 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 hCG_1809904A0A1W2PP81 198 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 A0A1W2PPE2 198 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 A0A1W2PR64 198 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 A0A1W2PRV1 198 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 CLPSL1A2RUU4 121 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 KDM4BO94953 1096 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 IL18R1Q13478 541 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 KISS1Q15726 138 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 GRK1Q15835 563 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 OLFML2AQ68BL7 652 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 ASPHD2Q6ICH7 369 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 GDPGP1Q6ZNW5 385 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 RPS4Y2Q8TD47 263 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 TSEN15Q8WW01 171 aaKnown RBP14.94□□□□□ -0.02
CLN3-237ENST00000569030 MEGF9Q9H1U4 602 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 CLEC2DQ9UHP7 191 aa14.94□□□□□ -0.02
CLN3-237ENST00000569030 CMYA5Q8N3K9 4069 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 SIRPB1O00241 398 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 SULT1B1O43704 296 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 HCKP08631 526 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 RPSAP08865 295 aaKnown RBP14.93□□□□□ -0.02
CLN3-237ENST00000569030 GNAO1P09471 354 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 OR3A1P47881 315 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 SOX2P48431 317 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 ZP1P60852 638 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 MEF2CQ06413 473 aaPredicted RBP14.93□□□□□ -0.02
CLN3-237ENST00000569030 CDK5R1Q15078 307 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 SPIN3Q5JUX0 258 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 ZNF529Q6P280 563 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 RPL22L1Q6P5R6 122 aaKnown RBP14.93□□□□□ -0.02
CLN3-237ENST00000569030 SAXO1Q8IYX7 474 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 ZSCAN4Q8NAM6 433 aaPredicted RBP14.93□□□□□ -0.02
CLN3-237ENST00000569030 OR51A2Q8NGJ7 313 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 LINC01006Q8NI28 216 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 HAVCR2Q8TDQ0 301 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 WFDC12Q8WWY7 111 aa14.93□□□□□ -0.02
CLN3-237ENST00000569030 SSX3Q99909 188 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms