RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 OR5T1Q8NG75 326 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 PP6455Q8WZ26 134 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 CRLF2Q9HC73 371 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 CNOT4O95628 575 aaKnown RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 NRASP01111 189 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 S100PP25815 95 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 EIF2S3P41091 472 aaKnown RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 SLC35G3Q8N808 338 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 CCDC71LQ8N9Z2 235 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 TCEAL7Q9BRU2 100 aa12.64□□□□□ -0.39
VPS35-210ENST00000568784 PTRH2Q9Y3E5 179 aaKnown RBP12.64□□□□□ -0.39
VPS35-210ENST00000568784 H0YL77 283 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 AP4M1O00189 453 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 GLB1P16278 677 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 AADACP22760 399 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 MAML2Q8IZL2 1156 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 PLPP5Q8NEB5 264 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 OR5C1Q8NGR4 320 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 MARS2Q96GW9 593 aaKnown RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 CHST5Q9GZS9 411 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 C19orf25Q9UFG5 118 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 CCDC187A0A096LP49 1063 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 CYB5BO43169 146 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 CLN5O75503 358 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 RPS2P15880 293 aaKnown RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 MSX1P28360 303 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 SUMO3P55854 103 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 RAB11AP62491 216 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 RPL23AP62750 156 aaKnown RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 LCN15Q6UWW0 184 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 ZNF441Q8N8Z8 693 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 CPNE4Q96A23 557 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 GNG13Q9P2W3 67 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 KLF2Q9Y5W3 355 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 CRYM-AS1A6NIL9 109 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 BCAT2O15382 392 aaPredicted RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 FOSL2P15408 326 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 S100A12P80511 92 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 FAM3AP98173 230 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 CNN3Q15417 329 aaKnown RBP12.63□□□□□ -0.39
VPS35-210ENST00000568784 OR10D4PQ8NGN7 298 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 TOLLIPQ9H0E2 274 aa12.63□□□□□ -0.39
VPS35-210ENST00000568784 PI4KAP42356 2102 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 MRPS34P82930 218 aaKnown RBP12.62□□□□□ -0.39
VPS35-210ENST00000568784 SLC16A14Q7RTX9 510 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 OR2C3Q8N628 320 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 OR2M3Q8NG83 312 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 SPTBN5Q9NRC6 3674 aaKnown RBP12.62□□□□□ -0.39
VPS35-210ENST00000568784 CCL2P13500 99 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 ATP6V0CP27449 155 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 NKX6-1P78426 367 aaPredicted RBP12.62□□□□□ -0.39
VPS35-210ENST00000568784 CCL20P78556 96 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 GUSBP11Q6P575 273 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 NAT6Q93015 286 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 LIME1Q9H400 295 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 BCO1Q9HAY6 547 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 ADAM20O43506 726 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 P2RY1P47900 373 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 RAB5CP51148 216 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 EWSR1Q01844 656 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS35-210ENST00000568784 RNF212Q495C1 297 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 LIAT1Q6ZQX7 453 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 DTX1Q86Y01 620 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 OSR2Q8N2R0 312 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 UBAC2Q8NBM4 344 aa12.62□□□□□ -0.39
VPS35-210ENST00000568784 PRF1P14222 555 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 SYT13Q7L8C5 426 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 SLC25A45Q8N413 288 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 TWSG1Q9GZX9 223 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 GAPDHP04406 335 aaKnown RBP12.61□□□□□ -0.39
VPS35-210ENST00000568784 DANCRP0C864 163 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 ZNF32P17041 273 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 NXPH1P58417 271 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 CTAG1AP78358 180 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 SURF2Q15527 256 aaPredicted RBP12.61□□□□□ -0.39
VPS35-210ENST00000568784 IZUMO4Q1ZYL8 232 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 CXorf66Q5JRM2 361 aaPredicted RBP12.61□□□□□ -0.39
VPS35-210ENST00000568784 RHBDD2Q6NTF9 364 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 NIPSNAP3BQ9BS92 247 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 TIMM10BQ9Y5J6 103 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 MTCH2Q9Y6C9 303 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 R4GN57 208 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 C5orf52A6NGY3 159 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 MSTNO14793 375 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 RTL6Q6ICC9 239 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 THNSL2Q86YJ6 484 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 CMTM1Q8IZ96 169 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 SGCZQ96LD1 299 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 TGIF2Q9GZN2 237 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 LRFN1Q9P244 771 aa12.61□□□□□ -0.39
VPS35-210ENST00000568784 A0A096LPE4 126 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 A0A1W2PPZ6 126 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 A0A1W2PR77 199 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 AQP7P3A6NL99 342 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 TK1P04183 234 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 RAB30Q15771 203 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 C10orf91Q5T1B1 145 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 AAED1Q7RTV5 226 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 OR10AD1Q8NGE0 317 aa12.6□□□□□ -0.39
VPS35-210ENST00000568784 ZNF845Q96IR2 970 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms