RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ACSM3Q53FZ2 586 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 RUSC1-AS1Q66K80 236 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 PNKDQ8N490 385 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 TPRX1Q8N7U7 411 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 Q8NFD4 153 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 OR4M2Q8NGB6 313 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 OR4D6Q8NGJ1 314 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 OR5D14Q8NGL3 314 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 C8orf46Q8TAG6 207 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 HAVCR2Q8TDQ0 301 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 TNFRSF14Q92956 283 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 UPRTQ96BW1 309 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 AJUBAQ96IF1 538 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 MGLLQ99685 303 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 BEX2Q9BXY8 128 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 CNTD2Q9H8S5 307 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 HMG20AQ9NP66 347 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 ESM1Q9NQ30 184 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 RASL12Q9NYN1 266 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 SLC25A10Q9UBX3 287 aaPredicted RBP7.58□□□□□ -1.2
VPS35-206ENST00000565228 ZNF69Q9UC07 566 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 CDC42EP3Q9UKI2 254 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 LRRC42Q9Y546 428 aa7.58□□□□□ -1.2
VPS35-206ENST00000565228 K7N7A8 449 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 NDUFA2O43678 99 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 VENTXO95231 258 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 HAND1O96004 215 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 SERPINA3P01011 423 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 KNG1P01042 644 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 MAS1P04201 325 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 HCKP08631 526 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 UCHL1P09936 223 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 HSMCR30P0CW71 290 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 CCL3L1P16619 93 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 SRD5A1P18405 259 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 RAB3AP20336 220 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 OR3A1P47881 315 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 NPY4RP50391 375 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 TAS2R43P59537 309 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 GABARAPL2P60520 117 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 ARF6P62330 175 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 IL13RA1P78552 427 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 MLLT11Q13015 90 aaPredicted RBP7.57□□□□□ -1.2
VPS35-206ENST00000565228 PLA2G7Q13093 441 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 KLRD1Q13241 179 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 ZNF146Q15072 292 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 PIGYQ3MUY2 71 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 DDI2Q5TDH0 399 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 BAIAP2L2Q6UXY1 529 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 NLRC3Q7RTR2 1065 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 SATL1Q86VE3 508 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 NR2C2APQ86WQ0 139 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 FAM58AQ8N1B3 248 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 TMEM185AQ8NFB2 350 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 OR4M1Q8NGD0 313 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 TNFAIP8L1Q8WVP5 186 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 C17orf50Q8WW18 174 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 TAF15Q92804 592 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS35-206ENST00000565228 EMG1Q92979 244 aaKnown RBP7.57□□□□□ -1.2
VPS35-206ENST00000565228 CHST6Q9GZX3 395 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 DNTTIP1Q9H147 329 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 ISYNA1Q9NPH2 558 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 OR5V1Q9UGF6 321 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 POLDIP2Q9Y2S7 368 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 AUP1Q9Y679 476 aa7.57□□□□□ -1.2
VPS35-206ENST00000565228 TRAV24A0A0B4J272 114 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 TRAV40A0A0B4J280 105 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 A0A0G2JK05 382 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 CENPVL3A0A0U1RRI6 287 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 MEGF11A6BM72 1044 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 J3QLI3 93 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 NDUFB3O43676 98 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 MMP23AO75900 390 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 OR2H2O95918 312 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 TK1P04183 234 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 PRKACAP17612 351 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 CPT2P23786 658 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 EEF1B2P24534 225 aaKnown RBP7.56□□□□□ -1.2
VPS35-206ENST00000565228 LMO1P25800 156 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 BDKRB2P30411 391 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 ZNF93P35789 620 aaPredicted RBP7.56□□□□□ -1.2
VPS35-206ENST00000565228 GDNFP39905 211 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 PTGFRP43088 359 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 CAV3P56539 151 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 SMIM21Q3B7S5 101 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 LDLRAD2Q5SZI1 272 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 UBE2UQ5VVX9 321 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 TMEM200BQ69YZ2 307 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 ELP2Q6IA86 826 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 BRICD5Q6PL45 260 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 BRD3OSQ6XYD6 125 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 SLC36A1Q7Z2H8 476 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 CEACAM19Q7Z692 300 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 C5orf24Q7Z6I8 188 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 PDZD9Q8IXQ8 264 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 SAXO1Q8IYX7 474 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 TMEM104Q8NE00 496 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 PXT1Q8NFP0 134 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 H1FXQ92522 213 aaKnown RBP7.56□□□□□ -1.2
VPS35-206ENST00000565228 MUL1Q969V5 352 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms