RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 ZCCHC4Q9H5U6 513 aa14.98□□□□□ -0.01
CLN3-214ENST00000565140 TRBV2A0A0J9YWF9 115 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 A0A1W2PPH5 198 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 TMEM212A6NML5 194 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 ANKRD65E5RJM6 399 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 NDUFA7O95182 113 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 CYB5AP00167 134 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 PAHP00439 452 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 PRKACAP17612 351 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 PAX6P26367 422 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 SNU13P55769 128 aaKnown RBP14.97□□□□□ -0.01
CLN3-214ENST00000565140 EDDM3BP56851 147 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 ADARB1P78563 741 aaKnown RBP14.97□□□□□ -0.01
CLN3-214ENST00000565140 MRPL28Q13084 256 aaKnown RBP14.97□□□□□ -0.01
CLN3-214ENST00000565140 MIDNQ504T8 468 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 XAF1Q6GPH4 301 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 GDPD3Q7L5L3 318 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 OR5D18Q8NGL1 313 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 OR4F5Q8NH21 305 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 SGMS2Q8NHU3 365 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 SNX22Q96L94 193 aa14.97□□□□□ -0.01
CLN3-214ENST00000565140 SEBOXQ9HB31 216 aaPredicted RBP14.97□□□□□ -0.01
CLN3-214ENST00000565140 C17orf98A8MV24 154 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 PSPNO60542 156 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 OCM2P0CE71 109 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 OCMP0CE72 109 aaPredicted RBP14.96□□□□□ -0.01
CLN3-214ENST00000565140 SRSF4Q08170 494 aaKnown RBP14.96□□□□□ -0.01
CLN3-214ENST00000565140 ZNF146Q15072 292 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 TTC23Q5W5X9 447 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 ZNF782Q6ZMW2 699 aaPredicted RBP14.96□□□□□ -0.01
CLN3-214ENST00000565140 TCF23Q7RTU1 214 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 SERPINA12Q8IW75 414 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 PARP16Q8N5Y8 322 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 PACRGLQ8N7B6 248 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 BEND2Q8NDZ0 799 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 RGP1Q92546 391 aaPredicted RBP14.96□□□□□ -0.01
CLN3-214ENST00000565140 CHST6Q9GZX3 395 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 COMMD4Q9H0A8 199 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 HEXA-AS1Q9H8Q6 139 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 BEX1Q9HBH7 125 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 HMG20AQ9NP66 347 aa14.96□□□□□ -0.01
CLN3-214ENST00000565140 WNK1Q9H4A3 2382 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 ALX3O95076 343 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 CCDC159P0C7I6 412 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 ZNF728P0DKX0 622 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 GABRR1P24046 479 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 COX7A1P24310 79 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 DCKP27707 260 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 BMXP51813 675 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 RPL15P61313 204 aaKnown RBP14.95□□□□□ -0.02
CLN3-214ENST00000565140 EDDM3AQ14507 147 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 OR2G6Q5TZ20 316 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 DHRSXQ8N5I4 330 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 TPRX1Q8N7U7 411 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 OR4S1Q8NGB4 309 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 OR5D14Q8NGL3 314 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 SLITRK2Q9H156 845 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 C8orf4Q9NR00 106 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 VPREB3Q9UKI3 123 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 DHDHQ9UQ10 334 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 GSTK1Q9Y2Q3 226 aa14.95□□□□□ -0.02
CLN3-214ENST00000565140 SIRT4Q9Y6E7 314 aaPredicted RBP14.95□□□□□ -0.02
CLN3-214ENST00000565140 A0A1B0GUS0 222 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 hCG_1809904A0A1W2PP81 198 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 A0A1W2PPE2 198 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 A0A1W2PR64 198 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 A0A1W2PRV1 198 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 CLPSL1A2RUU4 121 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 KDM4BO94953 1096 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 IL18R1Q13478 541 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 KISS1Q15726 138 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 GRK1Q15835 563 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 OLFML2AQ68BL7 652 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 ASPHD2Q6ICH7 369 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 GDPGP1Q6ZNW5 385 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 RPS4Y2Q8TD47 263 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 TSEN15Q8WW01 171 aaKnown RBP14.94□□□□□ -0.02
CLN3-214ENST00000565140 MEGF9Q9H1U4 602 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 CLEC2DQ9UHP7 191 aa14.94□□□□□ -0.02
CLN3-214ENST00000565140 CMYA5Q8N3K9 4069 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 SIRPB1O00241 398 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 SULT1B1O43704 296 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 HCKP08631 526 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 RPSAP08865 295 aaKnown RBP14.93□□□□□ -0.02
CLN3-214ENST00000565140 GNAO1P09471 354 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 OR3A1P47881 315 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 SOX2P48431 317 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 ZP1P60852 638 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 MEF2CQ06413 473 aaPredicted RBP14.93□□□□□ -0.02
CLN3-214ENST00000565140 CDK5R1Q15078 307 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 SPIN3Q5JUX0 258 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 ZNF529Q6P280 563 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 RPL22L1Q6P5R6 122 aaKnown RBP14.93□□□□□ -0.02
CLN3-214ENST00000565140 SAXO1Q8IYX7 474 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 ZSCAN4Q8NAM6 433 aaPredicted RBP14.93□□□□□ -0.02
CLN3-214ENST00000565140 OR51A2Q8NGJ7 313 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 LINC01006Q8NI28 216 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 HAVCR2Q8TDQ0 301 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 WFDC12Q8WWY7 111 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 SSX3Q99909 188 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms