RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PIPP12273 146 aaPredicted RBP12.05□□□□□ -0.48
CLN3-213ENST00000565047 PRKACBP22694 351 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 MTCP1P56278 107 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ACTA2P62736 377 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ACTG2P63267 376 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 MEF2CQ06413 473 aaPredicted RBP12.05□□□□□ -0.48
CLN3-213ENST00000565047 RAB40BQ12829 278 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 SLC35E4Q6ICL7 350 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ZBTB49Q6ZSB9 765 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 LHFPL4Q7Z7J7 247 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 Q8IYB0 196 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 FAM58AQ8N1B3 248 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 OR11H6Q8NGC7 330 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 OR52I1Q8NGK6 324 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 SPSB1Q96BD6 273 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 JAM3Q9BX67 310 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 HMG20AQ9NP66 347 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 ERVK13-1Q9NX77 482 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 FBLN5Q9UBX5 448 aa12.05□□□□□ -0.48
CLN3-213ENST00000565047 PRKDCP78527 4128 aaKnown RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 MEX3AA1L020 520 aaKnown RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 SNTNA6NMZ2 147 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 EBAG9O00559 213 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 KDM4BO94953 1096 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 LIMS3P0CW19 117 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 LIMS4P0CW20 117 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 IGHV1-8P0DP01 117 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 LMO1P25800 156 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 DUSP1P28562 367 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 LPCAT4Q643R3 524 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 ZNF626Q68DY1 528 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 DHRS7BQ6IAN0 325 aaPredicted RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 ZNF529Q6P280 563 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 ZNF782Q6ZMW2 699 aaPredicted RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 LHFPL2Q6ZUX7 228 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 PARP16Q8N5Y8 322 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 ASCC1Q8N9N2 400 aaKnown RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 OR4S1Q8NGB4 309 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 RPS4Y2Q8TD47 263 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 EMG1Q92979 244 aaKnown RBP12.04□□□□□ -0.48
CLN3-213ENST00000565047 OPALINQ96PE5 141 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 INPP5EQ9NRR6 644 aa12.04□□□□□ -0.48
CLN3-213ENST00000565047 hCG_1809904A0A1W2PP81 198 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 A0A1W2PPE2 198 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 A0A1W2PR64 198 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 A0A1W2PRV1 198 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 BTBD17A6NE02 478 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 KCNAB3O43448 404 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 FADS2O95864 444 aaKnown RBP12.03□□□□□ -0.48
CLN3-213ENST00000565047 CALCBP10092 127 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 COX7A1P24310 79 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 ERP29P30040 261 aaKnown RBP12.03□□□□□ -0.48
CLN3-213ENST00000565047 OR3A1P47881 315 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 ZP1P60852 638 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 SMN1Q16637 294 aaKnown RBP12.03□□□□□ -0.48
CLN3-213ENST00000565047 LRRC75BQ2VPJ9 315 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 SPIN3Q5JUX0 258 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 BRICD5Q6PL45 260 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 CCBE1Q6UXH8 406 aaPredicted RBP12.03□□□□□ -0.48
CLN3-213ENST00000565047 GDPD3Q7L5L3 318 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 TPRX1Q8N7U7 411 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 OR13C9Q8NGT0 318 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 Q96MT0 163 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 SPACA5Q96QH8 159 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 COMMD4Q9H0A8 199 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 PPA2Q9H2U2 334 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 ZCCHC4Q9H5U6 513 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 FGF20Q9NP95 211 aaPredicted RBP12.03□□□□□ -0.48
CLN3-213ENST00000565047 LINC00312Q9Y6C7 94 aa12.03□□□□□ -0.48
CLN3-213ENST00000565047 CHST1O43916 411 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 MMP23AO75900 390 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 ZNF20P17024 532 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 KIR2DS4P43632 304 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 POU3F4P49335 361 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 EFNB2P52799 333 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 EDDM3BP56851 147 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 Q6P435 159 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 SAXO1Q8IYX7 474 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 OR13C3Q8NGS6 347 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 RGP1Q92546 391 aaPredicted RBP12.02□□□□□ -0.49
CLN3-213ENST00000565047 RFT1Q96AA3 541 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 ZNF714Q96N38 554 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 PDCD1LG2Q9BQ51 273 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 CHST6Q9GZX3 395 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 SIGLEC9Q9Y336 463 aa12.02□□□□□ -0.49
CLN3-213ENST00000565047 RPL36Q9Y3U8 105 aaKnown RBP12.02□□□□□ -0.49
CLN3-213ENST00000565047 hADV38S2A0JD32 116 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 TMEM212A6NML5 194 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 MGST3O14880 152 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 OR2H2O95918 312 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 PRKACAP17612 351 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 PEX2P28328 305 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 GTF2A1P52655 376 aaPredicted RBP12.01□□□□□ -0.49
CLN3-213ENST00000565047 MRPL28Q13084 256 aaKnown RBP12.01□□□□□ -0.49
CLN3-213ENST00000565047 CDK5R1Q15078 307 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 GRK1Q15835 563 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 LY6EQ16553 131 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 XAF1Q6GPH4 301 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 SERPINA12Q8IW75 414 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 ZNF676Q8N7Q3 588 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms