RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 A0A1W2PR64 198 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 A0A1W2PRV1 198 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 TMEM82A0PJX8 343 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 HCKP08631 526 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 GABRR1P24046 479 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 COX7A1P24310 79 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 DCKP27707 260 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 ADARB1P78563 741 aaKnown RBP12.78□□□□□ -0.36
VPS39-203ENST00000561797 RELBQ01201 579 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 ACSM1Q08AH1 577 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 EDDM3AQ14507 147 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 TAF9Q16594 264 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 OR2G6Q5TZ20 316 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 XAF1Q6GPH4 301 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 SHISA2Q6UWI4 295 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 ZNF782Q6ZMW2 699 aaPredicted RBP12.78□□□□□ -0.36
VPS39-203ENST00000561797 SERPINA12Q8IW75 414 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 OR8H2Q8N162 312 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 SETD9Q8NE22 299 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 OR5D14Q8NGL3 314 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 C17orf50Q8WW18 174 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 DYRK2Q92630 601 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 JAM3Q9BX67 310 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 CHST6Q9GZX3 395 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 HEXA-AS1Q9H8Q6 139 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 C8orf4Q9NR00 106 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 DHDHQ9UQ10 334 aa12.78□□□□□ -0.36
VPS39-203ENST00000561797 IGKV1-12A0A0C4DH73 117 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 IRGMA1A4Y4 181 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 BTBD17A6NE02 478 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 POM121CA8CG34 1229 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 SIRPB1O00241 398 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 IGKV1D-12P01611 117 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 MT-ND2P03891 347 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 RPSAP08865 295 aaKnown RBP12.77□□□□□ -0.37
VPS39-203ENST00000561797 SOX2P48431 317 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 GRK1Q15835 563 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 TMPRSS11AQ6ZMR5 421 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 C17orf107Q6ZR85 190 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 TPRX1Q8N7U7 411 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 OR52N4Q8NGI2 321 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 OR4F5Q8NH21 305 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 HAVCR2Q8TDQ0 301 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 BEX1Q9HBH7 125 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 HMG20AQ9NP66 347 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 GLS2Q9UI32 602 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 GSTK1Q9Y2Q3 226 aa12.77□□□□□ -0.37
VPS39-203ENST00000561797 SULT1B1O43704 296 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 PSPNO60542 156 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 TMEM225BP0DP42 221 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 MYL12AP19105 171 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 PAX6P26367 422 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 BMXP51813 675 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 DLX6P56179 175 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 SCN1BQ07699 218 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 ZNF146Q15072 292 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 MIDNQ504T8 468 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 RPL22L1Q6P5R6 122 aaKnown RBP12.76□□□□□ -0.37
VPS39-203ENST00000561797 CRIP3Q6Q6R5 217 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 SATL1Q86VE3 508 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 PARP16Q8N5Y8 322 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 ZSCAN4Q8NAM6 433 aaPredicted RBP12.76□□□□□ -0.37
VPS39-203ENST00000561797 OR4S1Q8NGB4 309 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 SGMS2Q8NHU3 365 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 RGP1Q92546 391 aaPredicted RBP12.76□□□□□ -0.37
VPS39-203ENST00000561797 CLEC2DQ9UHP7 191 aa12.76□□□□□ -0.37
VPS39-203ENST00000561797 DIMT1Q9UNQ2 313 aaKnown RBP12.76□□□□□ -0.37
VPS39-203ENST00000561797 EXOSC1Q9Y3B2 195 aaKnown RBP12.76□□□□□ -0.37
VPS39-203ENST00000561797 C17orf98A8MV24 154 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 SH2D1BO14796 132 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 KDM4BO94953 1096 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 NDUFA7O95182 113 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 ZNF728P0DKX0 622 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 CAPGP40121 348 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 LGALS4P56470 323 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 MEF2CQ06413 473 aaPredicted RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 IL18R1Q13478 541 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 CDK5R1Q15078 307 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 KISS1Q15726 138 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 SPIN3Q5JUX0 258 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 OGFRL1Q5TC84 451 aaPredicted RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 GDPGP1Q6ZNW5 385 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 BEND2Q8NDZ0 799 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 GGHQ92820 318 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 TMEM80Q96HE8 168 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 AJUBAQ96IF1 538 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 SSX3Q99909 188 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 SEBOXQ9HB31 216 aaPredicted RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 EXOSC4Q9NPD3 245 aaKnown RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 CHCHD3Q9NX63 227 aaKnown RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 VPREB3Q9UKI3 123 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 MMP24Q9Y5R2 645 aa12.75□□□□□ -0.37
VPS39-203ENST00000561797 SIRT4Q9Y6E7 314 aaPredicted RBP12.75□□□□□ -0.37
VPS39-203ENST00000561797 A0A1B0GUS0 222 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 hADV38S2A0JD32 116 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 H3BUX3 64 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 MGST3O14880 152 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 ALX3O95076 343 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 OR2H2O95918 312 aa12.74□□□□□ -0.37
VPS39-203ENST00000561797 GNAO1P09471 354 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms