RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RANBP3Q9H6Z4 567 aaPredicted RBP15.32■□□□□ 0.04
VPS35-202ENST00000561713 IMPAD1Q9NX62 359 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 FAM90A8PA6NJQ4 464 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 EI24O14681 340 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 ENTPD6O75354 484 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 CIB2O75838 187 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 CHRM2P08172 466 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 IGHV1-8P0DP01 117 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 PRKACAP17612 351 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 FUT6P51993 359 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 NANOS3P60323 173 aaKnown RBP15.31■□□□□ 0.04
VPS35-202ENST00000561713 ZNF91Q05481 1191 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 GRK1Q15835 563 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 AANATQ16613 207 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 NSUN5P1Q3KNT7 163 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 TMEM95Q3KNT9 176 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 ZNF626Q68DY1 528 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 BAIAP2L2Q6UXY1 529 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 OR2G2Q8NGZ5 317 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 RNFT2Q96EX2 444 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 SPACA5Q96QH8 159 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 RAB18Q9NP72 206 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 NECAP2Q9NVZ3 263 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 AURKAIP1Q9NWT8 199 aaPredicted RBP15.31■□□□□ 0.04
VPS35-202ENST00000561713 TCF19Q9Y242 345 aa15.31■□□□□ 0.04
VPS35-202ENST00000561713 FAM172BPA6NC97 362 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 SIRPB1O00241 398 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 PSPNO60542 156 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 AZGP1P25311 298 aaKnown RBP15.3■□□□□ 0.04
VPS35-202ENST00000561713 RASSF2P50749 326 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR12D2P58182 307 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 CDC42P60953 191 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 ZIK1Q3SY52 487 aaPredicted RBP15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR4S1Q8NGB4 309 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR51A4Q8NGJ6 313 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR5D18Q8NGL1 313 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR13D1Q8NGV5 346 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 RFKQ969G6 155 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 FOXRED1Q96CU9 486 aaPredicted RBP15.3■□□□□ 0.04
VPS35-202ENST00000561713 SNX22Q96L94 193 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 OR5M11Q96RB7 305 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 MMP28Q9H239 520 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 TBL2Q9Y4P3 447 aaKnown RBP15.3■□□□□ 0.04
VPS35-202ENST00000561713 HILPDAQ9Y5L2 63 aa15.3■□□□□ 0.04
VPS35-202ENST00000561713 XPNPEP2O43895 674 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 MMP23AO75900 390 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ZNF20P17024 532 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ACTA2P62736 377 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ACTG2P63267 376 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ACTC1P68032 377 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ACTA1P68133 377 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ZNF676Q8N7Q3 588 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 FGGYQ96C11 551 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 ABCB10Q9NRK6 738 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 FRRS1LQ9P0K9 344 aa15.29■□□□□ 0.04
VPS35-202ENST00000561713 IGKV1-12A0A0C4DH73 117 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 TRBV2A0A0J9YWF9 115 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 A6NDX4 124 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 VGLL3A8MV65 326 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 SERPINA3P01011 423 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 IGKV1D-12P01611 117 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 ALPLP05186 524 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 CD28P10747 220 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 ATF1P18846 271 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 OR3A1P47881 315 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 RBP2P50120 134 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 ATP1B3P54709 279 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 MTCP1P56278 107 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 PRAMEF5Q5TYX0 476 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 LIAT1Q6ZQX7 453 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 Q6ZS46 218 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 TRAPPC6BQ86SZ2 158 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 FAM58AQ8N1B3 248 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 OR11H6Q8NGC7 330 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 OR13C9Q8NGT0 318 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 NDNFQ8TB73 568 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 RPS4Y2Q8TD47 263 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 PP6455Q8WZ26 134 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 PHF21AQ96BD5 680 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 SERTAD4Q9NUC0 356 aa15.28■□□□□ 0.04
VPS35-202ENST00000561713 IGHV2-26A0A0B4J1V2 119 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 hADV38S2A0JD32 116 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 DAPL1A0PJW8 107 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 H3BNX3 289 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 F2RL2O00254 374 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 SLC16A6O15403 523 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 ATP5HO75947 161 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 RBP4P02753 201 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 PEX2P28328 305 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 SLC34A1Q06495 639 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 TMED1Q13445 227 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 R3HDM4Q96D70 268 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 C4orf36Q96KX1 117 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 OPALINQ96PE5 141 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 CDCA4Q9BXL8 241 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 ING3Q9NXR8 418 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 GSTK1Q9Y2Q3 226 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 LINC00312Q9Y6C7 94 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 SESN1Q9Y6P5 492 aa15.27■□□□□ 0.04
VPS35-202ENST00000561713 DNAH9Q9NYC9 4486 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms