RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KCNK15Q9H427 330 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 MALRD1Q5VYJ5 2156 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 SMIM30A4D0T7 59 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 B4DSR2 109 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 CD5LO43866 347 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 HTR3BO95264 441 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 MSMBP08118 114 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 MTNR1BP49286 362 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 ZNF146Q15072 292 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 RSU1Q15404 277 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 BIVMQ86UB2 503 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 ZNRF1Q8ND25 227 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 SLC25A28Q96A46 364 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 RHOFQ9HBH0 211 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 ZNF581Q9P0T4 197 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 GSTK1Q9Y2Q3 226 aa18.08■□□□□ 0.49
SNX1-210ENST00000560260 TLN2Q9Y4G6 2542 aa18.08■□□□□ 0.48
SNX1-210ENST00000560260 A0A0G2JK05 382 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 C22orf46C9J442 243 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 SLC22A1O15245 554 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 HAND1O96004 215 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 SERPINA2P20848 420 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 CPT2P23786 658 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 GNB2P62879 340 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 IL13RA1P78552 427 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 COL10A1Q03692 680 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 PIGYQ3MUY2 71 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 SLC22A6Q4U2R8 563 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 SLC36A1Q7Z2H8 476 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 TBC1D15Q8TC07 691 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 DACT3Q96B18 629 aaPredicted RBP18.07■□□□□ 0.48
SNX1-210ENST00000560260 FOXRED1Q96CU9 486 aaPredicted RBP18.07■□□□□ 0.48
SNX1-210ENST00000560260 NAA50Q9GZZ1 169 aaKnown RBP18.07■□□□□ 0.48
SNX1-210ENST00000560260 CLN8Q9UBY8 286 aa18.07■□□□□ 0.48
SNX1-210ENST00000560260 SLC17A2O00624 439 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 AIREO43918 545 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 TGFAP01135 160 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 CLEC2LP0C7M8 214 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 PAX2Q02962 417 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 PDCD1Q15116 288 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 Q6P435 159 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 CLEC9AQ6UXN8 241 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 SLC16A12Q6ZSM3 486 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 TMEM104Q8NE00 496 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 OR51T1Q8NGJ9 327 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 OR6M1Q8NGM8 313 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 MMP26Q9NRE1 261 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 POLR3KQ9Y2Y1 108 aaPredicted RBP18.06■□□□□ 0.48
SNX1-210ENST00000560260 V9GY05 133 aa18.06■□□□□ 0.48
SNX1-210ENST00000560260 TMEM82A0PJX8 343 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 ZNF737O75373 536 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 FOXH1O75593 365 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 RAB3BP20337 219 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 HTR2CP28335 458 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 CLDN12P56749 244 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 LSM3P62310 102 aaKnown RBP18.05■□□□□ 0.48
SNX1-210ENST00000560260 P2RY14Q15391 338 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 TIMM50Q3ZCQ8 353 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 SPIN3Q5JUX0 258 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 HES5Q5TA89 166 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 METAP1DQ6UB28 335 aaPredicted RBP18.05■□□□□ 0.48
SNX1-210ENST00000560260 TMEM185AQ8NFB2 350 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 ST8SIA4Q92187 359 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 MED30Q96HR3 178 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 KCTD7Q96MP8 289 aa18.05■□□□□ 0.48
SNX1-210ENST00000560260 SEBOXQ9HB31 216 aaPredicted RBP18.05■□□□□ 0.48
SNX1-210ENST00000560260 PDCD5O14737 125 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 NDUFB3O43676 98 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 OR2H2O95918 312 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 VSIG8P0DPA2 414 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 SDC2P34741 201 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 NPY4RP50391 375 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 BMXP51813 675 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 DVL1P1P54792 670 aaPredicted RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 CAV3P56539 151 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 RBM11P57052 281 aaKnown RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 QRFPP83859 136 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 NHLRC3Q5JS37 347 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 OR10K2Q6IF99 312 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 FIP1L1Q6UN15 594 aaKnown RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 GDPGP1Q6ZNW5 385 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 C17orf107Q6ZR85 190 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 Q71RC1 249 aaPredicted RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 OSR2Q8N2R0 312 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 ZNF561Q8N587 486 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 TMEM186Q96B77 213 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 S100A13Q99584 98 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 BANF2Q9H503 90 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 PLGRKTQ9HBL7 147 aa18.04■□□□□ 0.48
SNX1-210ENST00000560260 SLC25A10Q9UBX3 287 aaPredicted RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 TEP1Q99973 2627 aaKnown RBP18.04■□□□□ 0.48
SNX1-210ENST00000560260 SIRPB1O00241 398 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 PSPNO60542 156 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 CHRM2P08172 466 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 CFPP27918 469 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 UNC119Q13432 240 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 IL13RA2Q14627 380 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 RAB11BQ15907 218 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 GLCCI1Q86VQ1 547 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 CYYR1Q96J86 154 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms