RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 HEXA-AS1Q9H8Q6 139 aa14.34□□□□□ -0.11
HDDC3-205ENST00000559898 KIAA2026Q5HYC2 2103 aa14.33□□□□□ -0.11
HDDC3-205ENST00000559898 SIRPB1O00241 398 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ARG1P05089 322 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ISG15P05161 165 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF728P0DKX0 622 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 IGHV1-8P0DP01 117 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 PRKACAP17612 351 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 GDNFP39905 211 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 OR3A1P47881 315 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 RBP2P50120 134 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ATP1B3P54709 279 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 PDZK1IP1Q13113 114 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ALKBH1Q13686 389 aaKnown RBP14.33□□□□□ -0.12
HDDC3-205ENST00000559898 CNN3Q15417 329 aaKnown RBP14.33□□□□□ -0.12
HDDC3-205ENST00000559898 SMN1Q16637 294 aaKnown RBP14.33□□□□□ -0.12
HDDC3-205ENST00000559898 TMEM244Q5VVB8 128 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 GDPD3Q7L5L3 318 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 TMEM219Q86XT9 240 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 FAM58AQ8N1B3 248 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ACBD7Q8N6N7 88 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 FAM110DQ8TAY7 271 aaPredicted RBP14.33□□□□□ -0.12
HDDC3-205ENST00000559898 PP6455Q8WZ26 134 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 SNX22Q96L94 193 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ALG8Q9BVK2 526 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 S100A14Q9HCY8 104 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 ORC6Q9Y5N6 252 aa14.33□□□□□ -0.12
HDDC3-205ENST00000559898 PRKDCP78527 4128 aaKnown RBP14.33□□□□□ -0.12
HDDC3-205ENST00000559898 TRBV2A0A0J9YWF9 115 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 SERPINA3P01011 423 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF20P17024 532 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 GABRR1P24046 479 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 EFNB2P52799 333 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 ACTC1P68032 377 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 ACTA1P68133 377 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 GRK1Q15835 563 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 MEDAGQ5VYS4 303 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 Q6ZS46 218 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 UTS2BQ765I0 119 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 C1QL4Q86Z23 238 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 DNAAF1Q8NEP3 725 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 OR13C3Q8NGS6 347 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 RHOXF1Q8NHV9 184 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 OPALINQ96PE5 141 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 PDCD1LG2Q9BQ51 273 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 GSTK1Q9Y2Q3 226 aa14.32□□□□□ -0.12
HDDC3-205ENST00000559898 FAM172BPA6NC97 362 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 M0QZ24 198 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 GABRA5P31644 462 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 CCR9P51686 369 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 GTF2A1P52655 376 aaPredicted RBP14.31□□□□□ -0.12
HDDC3-205ENST00000559898 GALEQ14376 348 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 FAM189A2Q15884 450 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 SSX2Q16385 188 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF626Q68DY1 528 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 XAF1Q6GPH4 301 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 ZFP1Q6P2D0 407 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 LYG1Q8N1E2 194 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 CCDC54Q8NEL0 328 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 OR52I1Q8NGK6 324 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 RGP1Q92546 391 aaPredicted RBP14.31□□□□□ -0.12
HDDC3-205ENST00000559898 C10orf35Q96D05 121 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF714Q96N38 554 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 HMG20AQ9NP66 347 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 FAM118AQ9NWS6 357 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 ERVK13-1Q9NX77 482 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 ING3Q9NXR8 418 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 FBLN5Q9UBX5 448 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 HHLA2Q9UM44 414 aa14.31□□□□□ -0.12
HDDC3-205ENST00000559898 A0A1W2PPH5 198 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 TIMM23O14925 209 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ZFPL1O95159 310 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 CLIC3O95833 236 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 OR2H2O95918 312 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 LGALS4P56470 323 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ACTA2P62736 377 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ACTG2P63267 376 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 DYNC1I2Q13409 638 aaKnown RBP14.3□□□□□ -0.12
HDDC3-205ENST00000559898 IL18R1Q13478 541 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF146Q15072 292 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 PRAMEF5Q5TYX0 476 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 LPCAT4Q643R3 524 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 Q6P435 159 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 LHFPL2Q6ZUX7 228 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 KCTD20Q7Z5Y7 419 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 KLHDC1Q8N7A1 406 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF676Q8N7Q3 588 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 OR11H6Q8NGC7 330 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 MMP27Q9H306 513 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF702PQ9H963 129 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 ZNF581Q9P0T4 197 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 HILPDAQ9Y5L2 63 aa14.3□□□□□ -0.12
HDDC3-205ENST00000559898 LOC100130705A0A1B0GUX0 176 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 A6NDX4 124 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 WBP4O75554 376 aaKnown RBP14.29□□□□□ -0.12
HDDC3-205ENST00000559898 KDM4BO94953 1096 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 KIR2DS4P43632 304 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 GLIPR1P48060 266 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 ZP1P60852 638 aa14.29□□□□□ -0.12
HDDC3-205ENST00000559898 PDLIM3Q53GG5 364 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms