RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RPUSD1Q9UJJ7 312 aaKnown RBP11.25□□□□□ -0.61
SHMT2-228ENST00000557302 FOXJ3Q9UPW0 622 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 MXRA5Q9NR99 2828 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 PIN1P1O15428 100 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 IFNA2P01563 188 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 SFTPBP07988 381 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 CHRM2P08172 466 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 PPIAL4GP0DN37 164 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 CALCBP10092 127 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 CPEP16870 476 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 PSMA1P25786 263 aaKnown RBP11.24□□□□□ -0.61
SHMT2-228ENST00000557302 SNU13P55769 128 aaKnown RBP11.24□□□□□ -0.61
SHMT2-228ENST00000557302 EMX1Q04741 257 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-228ENST00000557302 SCGB2A2Q13296 93 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 INSL4Q14641 139 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 TRAM1Q15629 374 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 ARMCX4Q5H9R4 360 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 SPIN3Q5JUX0 258 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 SPARTQ8N0X7 666 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 ASCC1Q8N9N2 400 aaKnown RBP11.24□□□□□ -0.61
SHMT2-228ENST00000557302 TMEM203Q969S6 136 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 DCTN5Q9BTE1 182 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 ELL3Q9HB65 397 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-228ENST00000557302 IL36RNQ9UBH0 155 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 GLS2Q9UI32 602 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 LRRC42Q9Y546 428 aa11.24□□□□□ -0.61
SHMT2-228ENST00000557302 TRBV23-1A0A0A0MS06 115 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 MAGEA13PA6NCF6 341 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 HAND1O96004 215 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 MAS1P04201 325 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 PTGFRP43088 359 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 OR3A4PP47883 348 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 MTNR1BP49286 362 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 BMXP51813 675 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 FGF12P61328 243 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 RPS25P62851 125 aaKnown RBP11.23□□□□□ -0.61
SHMT2-228ENST00000557302 COL10A1Q03692 680 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF146Q15072 292 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 KCTD21Q4G0X4 260 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 METTL11BQ5VVY1 283 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF773Q6PK81 442 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 UNQ9370/PRO34162Q6UXP9 181 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 CEACAM19Q7Z692 300 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 PHC2Q8IXK0 858 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 JAGN1Q8N5M9 183 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 NKAIN3Q8N8D7 197 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 LY6G5BQ8NDX9 201 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 C8orf46Q8TAG6 207 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 DMRTB1Q96MA1 342 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 NKX3-1Q99801 234 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-228ENST00000557302 KRTAP3-3Q9BYR6 98 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 KRTAP3-2Q9BYR7 98 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 FAM234AQ9H0X4 552 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 CNTD2Q9H8S5 307 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 SEBOXQ9HB31 216 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-228ENST00000557302 TCF7L1Q9HCS4 588 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 GSTK1Q9Y2Q3 226 aa11.23□□□□□ -0.61
SHMT2-228ENST00000557302 A0A1W2PQ09 198 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 K7N7A8 449 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 SH2D1BO14796 132 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF737O75373 536 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 SC5DO75845 299 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 RGS9O75916 674 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-228ENST00000557302 FSHBP01225 129 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 TK1P04183 234 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 DUSP1P28562 367 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ARF6P62330 175 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 RSU1Q15404 277 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 HSD17B12Q53GQ0 312 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 FAM27D1Q5T7N8 215 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 UBE2UQ5VVX9 321 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ELP2Q6IA86 826 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ASCL4Q6XD76 172 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 CDH26Q8IXH8 852 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 CMTM4Q8IZR5 234 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 PHYHIPQ92561 330 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 FCGR1BQ92637 280 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 UPRTQ96BW1 309 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 S100A13Q99584 98 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 PCGF1Q9BSM1 259 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 METTL9Q9H1A3 318 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 EXOSC4Q9NPD3 245 aaKnown RBP11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ONECUT1Q9UBC0 465 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 ING4Q9UNL4 249 aa11.22□□□□□ -0.61
SHMT2-228ENST00000557302 MEGF11A6BM72 1044 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 TOX4O94842 621 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 CDRT1O95170 752 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 UCHL1P09936 223 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 EPHA1P21709 976 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 GABRR1P24046 479 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 PSMB9P28065 219 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 GABRA5P31644 462 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 RPL31P62899 125 aaKnown RBP11.21□□□□□ -0.61
SHMT2-228ENST00000557302 PRIMA1Q86XR5 153 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 FAM185AQ8N0U4 392 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 KIR3DL3Q8N743 410 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 OR5D13Q8NGL4 314 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 OR10K1Q8NGX5 313 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 PPP1R35Q8TAP8 253 aa11.21□□□□□ -0.61
SHMT2-228ENST00000557302 SNX22Q96L94 193 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms