RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ATPAF2Q8N5M1 289 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 OR6K2Q8NGY2 324 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 OR51Q1Q8NH59 317 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 CCL17Q92583 94 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 OR2V2Q96R30 315 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 NLE1Q9NVX2 485 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-218ENST00000556256 SDHAF2Q9NX18 166 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 RBM12B-AS1Q9P1G2 102 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 TAC3Q9UHF0 121 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 CARHSP1Q9Y2V2 147 aaKnown RBP1.31□□□□□ -2.2
SCFD1-218ENST00000556256 ZBED9Q6R2W3 1325 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 BAZ1BQ9UIG0 1483 aaKnown RBP1.31□□□□□ -2.2
SCFD1-218ENST00000556256 BAZ2AQ9UIF9 1905 aaKnown RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 IGHV3-43A0A0B4J1X8 118 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 H3BQ85 93 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 C15orf65H3BRN8 121 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 UPK2O00526 184 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 ISLRO14498 428 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 ENTPD6O75354 484 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 KLHL2O95198 593 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 RLN2P04090 185 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 IVLP07476 585 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 ACOT2P49753 483 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 MEF2BQ02080 365 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 FMODQ06828 376 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 C2orf80Q0P641 193 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 BIKQ13323 160 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 ENDOGQ14249 297 aaKnown RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 SLC9A3R2Q15599 337 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 SSX1Q16384 188 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 C18orf21Q32NC0 220 aaPredicted RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 ATP6AP1LQ52LC2 224 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 LIN9Q5TKA1 542 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 RESP18Q5W5W9 173 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 TMEM215Q68D42 235 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 AMMECR1LQ6DCA0 310 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 GLYATQ6IB77 296 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 UGT2A3Q6UWM9 527 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 TPGS1Q6ZTW0 290 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 COMTD1Q86VU5 262 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 RPRMLQ8N4K4 120 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 OR2K2Q8NGT1 345 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 OR8S1Q8NH09 359 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 DOK4Q8TEW6 326 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 CDKL2Q92772 493 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 FXYD5Q96DB9 178 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 BIRC8Q96P09 236 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 OR2M4Q96R27 311 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 PKMYT1Q99640 499 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 NXF2Q9GZY0 626 aaKnown RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 RAB1BQ9H0U4 201 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 VCX3AQ9NNX9 186 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 RBMX2Q9Y388 322 aaKnown RBP1.3□□□□□ -2.2
SCFD1-218ENST00000556256 NOS1P29475 1434 aa1.3□□□□□ -2.2
SCFD1-218ENST00000556256 MYBPHLA2RUH7 354 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 BOLA2-SMG1P6H3BVE0 249 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 SPOPO43791 374 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 COX7A2P2O60397 106 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 CPSF4O95639 269 aaKnown RBP1.29□□□□□ -2.2
SCFD1-218ENST00000556256 CECR9P0C854 216 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 PTHLHP12272 177 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 IMPA1P29218 277 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 DNASE1L1P49184 302 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 NUDT2P50583 147 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 FOXA1P55317 472 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 IHHQ14623 411 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 KRTAP25-1Q3LHN0 102 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 DEFB134Q4QY38 66 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 PDZD11Q5EBL8 140 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF660Q6AZW8 331 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-218ENST00000556256 HCP5Q6MZN7 132 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 LINC00596Q86U02 117 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 ZFP82Q8N141 532 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 SPICQ8N5J4 248 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 C3orf22Q8N5N4 141 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 LRRC39Q96DD0 335 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 CPB2Q96IY4 423 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 GLT1D1Q96MS3 346 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 VAT1Q99536 393 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 HINT2Q9BX68 163 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 SRRQ9GZT4 340 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 SDHAF3Q9NRP4 125 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 CLEC2DQ9UHP7 191 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 CYB5R1Q9UHQ9 305 aa1.29□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF706Q9Y5V0 76 aaPredicted RBP1.29□□□□□ -2.2
SCFD1-218ENST00000556256 SETD1AO15047 1707 aaKnown RBP1.29□□□□□ -2.2
SCFD1-218ENST00000556256 LOXHD1Q8IVV2 1947 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 IGHV3-21A0A0B4J1V1 117 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 RBFOX3A6NFN3 312 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CD300LBA8K4G0 201 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 NDUFS8O00217 210 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CDK1P06493 297 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CGB3P0DN86 165 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CGB7P0DN87 165 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CCL2P13500 99 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 M6PRP20645 277 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 CNTFRP26992 372 aa1.28□□□□□ -2.2
SCFD1-218ENST00000556256 DEKP35659 375 aaKnown RBP1.28□□□□□ -2.2
SCFD1-218ENST00000556256 NUP62P37198 522 aaPredicted RBP1.28□□□□□ -2.2
SCFD1-218ENST00000556256 GCLMP48507 274 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms