RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 HAND1O96004 215 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 IGHV4-59P01825 116 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 CCL3L1P16619 93 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 BCL3P20749 454 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 CAPGP40121 348 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 POU3F4P49335 361 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ERVFRD-1P60508 538 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 IL18R1Q13478 541 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 BLMHQ13867 455 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF273Q14593 569 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF146Q15072 292 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 CDK5R1Q15078 307 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 CCDC58Q4VC31 144 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 NCR3LG1Q68D85 454 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ASPHD2Q6ICH7 369 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF529Q6P280 563 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 RPL22L1Q6P5R6 122 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 C17orf107Q6ZR85 190 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 SERPINA12Q8IW75 414 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 Q8IYB0 196 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 FAM58AQ8N1B3 248 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 C3orf56Q8N813 242 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF485Q8NCK3 441 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 SETD9Q8NE22 299 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 OR5D13Q8NGL4 314 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 FBLIM1Q8WUP2 373 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 SSMEM1Q8WWF3 244 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 GGHQ92820 318 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 EMG1Q92979 244 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 SPACA5Q96QH8 159 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 HMG20AQ9NP66 347 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 TNFRSF19Q9NS68 423 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 HSPE1-MOB4S4R3N1 261 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 DOCK11Q5JSL3 2073 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 IRGMA1A4Y4 181 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 C17orf98A8MV24 154 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 PSPNO60542 156 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 KDM4BO94953 1096 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 LALBAP00709 142 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 CALCBP10092 127 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 EEF1B2P24534 225 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 DUSP1P28562 367 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 SAA4P35542 130 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 ZP1P60852 638 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 RELBQ01201 579 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 ACSM1Q08AH1 577 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 FIP1L1Q6UN15 594 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 TMPRSS11AQ6ZMR5 421 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 TCF23Q7RTU1 214 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 SAXO1Q8IYX7 474 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 ASCC1Q8N9N2 400 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 OR52N4Q8NGI2 321 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 OR5D18Q8NGL1 313 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 OR5D14Q8NGL3 314 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 TBC1D15Q8TC07 691 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 C17orf50Q8WW18 174 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 TFAP2CQ92754 450 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 TMEM80Q96HE8 168 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 SNX22Q96L94 193 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF747Q9BV97 191 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 COMMD4Q9H0A8 199 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 VCX3BQ9H321 246 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 BABAM2Q9NXR7 383 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 C1RLQ9NZP8 487 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNRD1Q9P1U0 126 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 DHDHQ9UQ10 334 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 EXOSC1Q9Y3B2 195 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 SF3B6Q9Y3B4 125 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 FAM96BQ9Y3D0 163 aa8.38□□□□□ -1.07
CCDC88C-206ENST00000553437 MEIOCA2RUB1 952 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 SULT1B1O43704 296 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 CYB5AP00167 134 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 FBP1P09467 338 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 PIPP12273 146 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 PRKACAP17612 351 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 MDKP21741 143 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 SOX2P48431 317 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 ST3GAL4Q11206 333 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 DOC2BQ14184 412 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 KISS1Q15726 138 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 TAF9Q16594 264 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 MIDNQ504T8 468 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 SPIN3Q5JUX0 258 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 DMKNQ6E0U4 476 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 C8orf59Q8N0T1 100 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 OR8H2Q8N162 312 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 ZSCAN4Q8NAM6 433 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 OR4S1Q8NGB4 309 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 OR51A2Q8NGJ7 313 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 OR52N1Q8NH53 320 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 GPR148Q8TDV2 347 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 TSEN15Q8WW01 171 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 NRG4Q8WWG1 115 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 RHOFQ9HBH0 211 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 PLCXD1Q9NUJ7 323 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 PSORS1C1Q9UIG5 152 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 MMP24Q9Y5R2 645 aa8.37□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PPH5 198 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 MEX3AA1L020 520 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 EFCAB10A6NFE3 127 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms