RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 HHLA2Q9UM44 414 aa13.25□□□□□ -0.29
VPS29-207ENST00000549970 EXOGQ9Y2C4 368 aaKnown RBP13.25□□□□□ -0.29
VPS29-207ENST00000549970 SIGLEC9Q9Y336 463 aa13.25□□□□□ -0.29
VPS29-207ENST00000549970 VWFP04275 2813 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 TRBV2A0A0J9YWF9 115 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 PRKACAP17612 351 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 PEX2P28328 305 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 CCR9P51686 369 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 DEFA6Q01524 100 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 GRK1Q15835 563 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 AANATQ16613 207 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 LHFPL3Q86UP9 236 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 ENTHD1Q8IYW4 607 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 DYNAPQ8N1N2 210 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 OR52N4Q8NGI2 321 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 OR13D1Q8NGV5 346 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 SPSB1Q96BD6 273 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 ZNF714Q96N38 554 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 SPACA5Q96QH8 159 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 C9orf16Q9BUW7 83 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 ALG8Q9BVK2 526 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 FBLN5Q9UBX5 448 aa13.24□□□□□ -0.29
VPS29-207ENST00000549970 hADV38S2A0JD32 116 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 OR4C45A6NMZ5 311 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 PSPNO60542 156 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 IGHV1-8P0DP01 117 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 DBTP11182 482 aaKnown RBP13.23□□□□□ -0.29
VPS29-207ENST00000549970 GABRB1P18505 474 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 PDZK1IP1Q13113 114 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 DYNC1I2Q13409 638 aaKnown RBP13.23□□□□□ -0.29
VPS29-207ENST00000549970 ALKBH1Q13686 389 aaKnown RBP13.23□□□□□ -0.29
VPS29-207ENST00000549970 CRIP3Q6Q6R5 217 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 ZNF676Q8N7Q3 588 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 OR5D18Q8NGL1 313 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 OR4C13Q8NGP0 309 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 OR13C9Q8NGT0 318 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 PIFOQ8TCI5 191 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 MRPL48Q96GC5 212 aaKnown RBP13.23□□□□□ -0.29
VPS29-207ENST00000549970 SLC29A1Q99808 456 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 ISG20L2Q9H9L3 353 aaKnown RBP13.23□□□□□ -0.29
VPS29-207ENST00000549970 AMBNQ9NP70 447 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 RAB18Q9NP72 206 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 MYRFQ9Y2G1 1151 aa13.23□□□□□ -0.29
VPS29-207ENST00000549970 FAM90A8PA6NJQ4 464 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 ODF3BA8MYP8 253 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 SIRPB1O00241 398 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 CHST1O43916 411 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 TSPAN15O95858 294 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 RBP4P02753 201 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 RAB13P51153 203 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 MEF2CQ06413 473 aaPredicted RBP13.22□□□□□ -0.29
VPS29-207ENST00000549970 GALEQ14376 348 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 FAM189A2Q15884 450 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 SSX2Q16385 188 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 ZNF626Q68DY1 528 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 RNF144BQ7Z419 303 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 C10orf67Q8IYJ2 551 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 OR4S1Q8NGB4 309 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 FOXRED1Q96CU9 486 aaPredicted RBP13.22□□□□□ -0.29
VPS29-207ENST00000549970 NKX3-1Q99801 234 aaPredicted RBP13.22□□□□□ -0.29
VPS29-207ENST00000549970 SEBOXQ9HB31 216 aaPredicted RBP13.22□□□□□ -0.29
VPS29-207ENST00000549970 S100A14Q9HCY8 104 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 GLS2Q9UI32 602 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 GSTK1Q9Y2Q3 226 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 TBL2Q9Y4P3 447 aaKnown RBP13.22□□□□□ -0.29
VPS29-207ENST00000549970 LINC00312Q9Y6C7 94 aa13.22□□□□□ -0.29
VPS29-207ENST00000549970 IGKV1-12A0A0C4DH73 117 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 LOC100130705A0A1B0GUX0 176 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 MPZL2O60487 215 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 IGKV1D-12P01611 117 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 KIR2DS4P43632 304 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 OR3A1P47881 315 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 ZNF146Q15072 292 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 SPIN3Q5JUX0 258 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 LDLRAD2Q5SZI1 272 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 LIAT1Q6ZQX7 453 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 ZBTB49Q6ZSB9 765 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 TRAPPC6BQ86SZ2 158 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 SYS1Q8N2H4 156 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 OR11H6Q8NGC7 330 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 OR2T6Q8NHC8 308 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 RHOXF1Q8NHV9 184 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 Q96MT0 163 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 MYCBPQ99417 103 aaPredicted RBP13.21□□□□□ -0.29
VPS29-207ENST00000549970 NPFFR1Q9GZQ6 430 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 RANBP3Q9H6Z4 567 aaPredicted RBP13.21□□□□□ -0.29
VPS29-207ENST00000549970 NEK6Q9HC98 313 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 HMG20AQ9NP66 347 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 EXOSC4Q9NPD3 245 aaKnown RBP13.21□□□□□ -0.29
VPS29-207ENST00000549970 ABCB10Q9NRK6 738 aa13.21□□□□□ -0.29
VPS29-207ENST00000549970 TET2Q6N021 2002 aaPredicted RBP13.21□□□□□ -0.29
VPS29-207ENST00000549970 VGLL3A8MV65 326 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 MGST3O14880 152 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 FADS2O95864 444 aaKnown RBP13.2□□□□□ -0.3
VPS29-207ENST00000549970 OR2H2O95918 312 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 EFNB2P52799 333 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 C2orf68Q2NKX9 166 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 HIST2H2BDQ6DRA6 164 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 Q6ZTK2 550 aa13.2□□□□□ -0.3
VPS29-207ENST00000549970 PQLC1Q8N2U9 271 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms