RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 RPL31P62899 125 aaKnown RBP12.34□□□□□ -0.43
UBE3B-212ENST00000540230 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 DMKNQ6E0U4 476 aaPredicted RBP12.34□□□□□ -0.43
UBE3B-212ENST00000540230 HCP5Q6MZN7 132 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 ZNF529Q6P280 563 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 METAP1DQ6UB28 335 aaPredicted RBP12.34□□□□□ -0.43
UBE3B-212ENST00000540230 C17orf107Q6ZR85 190 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 CMTM4Q8IZR5 234 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 FAM58AQ8N1B3 248 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 C11orf42Q8N5U0 333 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 OR52N4Q8NGI2 321 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 OR5D14Q8NGL3 314 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 SGCDQ92629 289 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 PGLYRP3Q96LB9 341 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 TNFRSF19Q9NS68 423 aa12.34□□□□□ -0.43
UBE3B-212ENST00000540230 PNMA8CA0A1B0GUJ8 204 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 PSPNO60542 156 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 KDM4BO94953 1096 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 ALX3O95076 343 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 HAND1O96004 215 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 CHRM2P08172 466 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 KISS1Q15726 138 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 Q6YL49 198 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 Q8IYB0 196 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 GPR148Q8TDV2 347 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 TMEM106AQ96A25 262 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 CHST6Q9GZX3 395 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 HMG20AQ9NP66 347 aa12.33□□□□□ -0.44
UBE3B-212ENST00000540230 CHCHD3Q9NX63 227 aaKnown RBP12.33□□□□□ -0.44
UBE3B-212ENST00000540230 TMEM89A2RUT3 159 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 CYB5AP00167 134 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 RNASE1P07998 156 aaKnown RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 MELTFP08582 738 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 RPSAP08865 295 aaKnown RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 RPS11P62280 158 aaKnown RBP eCLIP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 ZNF146Q15072 292 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 C1orf122Q6ZSJ8 110 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 TCF23Q7RTU1 214 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 STX19Q8N4C7 294 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 TPRX1Q8N7U7 411 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 GHSRQ92847 366 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 ZDHHC16Q969W1 377 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 FAM234AQ9H0X4 552 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 METTL8Q9H825 291 aaKnown RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 UNKLQ9H9P5 680 aaKnown RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 NEK6Q9HC98 313 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 PAK1IP1Q9NWT1 392 aaPredicted RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 GSTK1Q9Y2Q3 226 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 ZNF281Q9Y2X9 895 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 TRBV5-5A0A0J9YX44 114 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 H0YJX3 145 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 CLDN34H7C241 214 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 GABRPO00591 440 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 RAB3AP20336 220 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 EDDM3BP56851 147 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 MED21Q13503 144 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 C6orf141Q5SZD1 244 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 OR8H2Q8N162 312 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 OR4S1Q8NGB4 309 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 GCDHQ92947 438 aaPredicted RBP12.32□□□□□ -0.44
UBE3B-212ENST00000540230 SNX22Q96L94 193 aa12.32□□□□□ -0.44
UBE3B-212ENST00000540230 MAGEA13PA6NCF6 341 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 SIRPB1O00241 398 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 NPFFO15130 113 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 DLX6P56179 175 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 WNT4P56705 351 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 EDDM3AQ14507 147 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 NANOGP1Q8N7R0 232 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 C17orf50Q8WW18 174 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 SLC25A28Q96A46 364 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 CHIAQ9BZP6 476 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 SEBOXQ9HB31 216 aaPredicted RBP12.31□□□□□ -0.44
UBE3B-212ENST00000540230 NOX4Q9NPH5 578 aa12.31□□□□□ -0.44
UBE3B-212ENST00000540230 PTGES3LE9PB15 166 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 MYL12BO14950 172 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 OR2H2O95918 312 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 IGHV4-59P01825 116 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 CDK1P06493 297 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 CD2P06729 351 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 TMEM225BP0DP42 221 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 GABRR1P24046 479 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 SAA4P35542 130 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 OR3A1P47881 315 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 COMPP49747 757 aaPredicted RBP12.3□□□□□ -0.44
UBE3B-212ENST00000540230 UBE2E1P51965 193 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 GUCA2AQ02747 115 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 BLMHQ13867 455 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 GRK1Q15835 563 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 SPIN3Q5JUX0 258 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 C12orf54Q6X4T0 127 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 ZNF782Q6ZMW2 699 aaPredicted RBP12.3□□□□□ -0.44
UBE3B-212ENST00000540230 GDPD3Q7L5L3 318 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 SATL1Q86VE3 508 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 SAXO1Q8IYX7 474 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 OR10K1Q8NGX5 313 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 ZMAT3Q9HA38 289 aaKnown RBP12.3□□□□□ -0.44
UBE3B-212ENST00000540230 PCDHGB5Q9Y5G0 923 aa12.3□□□□□ -0.44
UBE3B-212ENST00000540230 TRAV8-7A0A075B6U6 113 aa12.29□□□□□ -0.44
UBE3B-212ENST00000540230 A0A1W2PPK0 400 aa12.29□□□□□ -0.44
UBE3B-212ENST00000540230 MEIOCA2RUB1 952 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms