RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SHANK1Q9Y566 2161 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 REV3LO60673 3130 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 NKX2-6A6NCS4 301 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 CYB5BO43169 146 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 GATCO43716 136 aaKnown RBP9.8□□□□□ -0.84
SYNE1-237ENST00000539504 NKX6-1P78426 367 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-237ENST00000539504 CFHR1Q03591 330 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 PYY3Q5JQD4 70 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 AKR1C8PQ5T2L2 129 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF429Q86V71 674 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 SSC4DQ8WTU2 575 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 DMRT1Q9Y5R6 373 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 TNFSF12O43508 249 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 NR2C1P13056 603 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 HOXA5P20719 270 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 RND3P61587 244 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 DLK1P80370 383 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 SNAI3Q3KNW1 292 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 D2HGDHQ8N465 521 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 SNIP1Q8TAD8 396 aaKnown RBP9.8□□□□□ -0.84
SYNE1-237ENST00000539504 MALSU1Q96EH3 234 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 NIPSNAP3BQ9BS92 247 aa9.8□□□□□ -0.84
SYNE1-237ENST00000539504 K7N7A8 449 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ATXN7O15265 892 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 EN2P19622 333 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ALDH3B1P43353 468 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 HTR5AP47898 357 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CDX1P47902 265 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 SLC16A14Q7RTX9 510 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 DEFB126Q9BYW3 111 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ULBP2Q9BZM5 246 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CPAMD8Q8IZJ3 1885 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 TMEM131Q92545 1883 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 G3V3Y1 287 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 PPP1R2P9O14990 202 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 PPIHO43447 177 aaKnown RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ZFAND5O76080 213 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 OR7C1O76099 320 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 AADACP22760 399 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 GNRHRP30968 328 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 SHHQ15465 462 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 NKAIN1Q4KMZ8 207 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 C4orf17Q53FE4 359 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 RAET1LQ5VY80 246 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CDPF1Q6NVV7 123 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 FBXO46Q6PJ61 603 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CRIP3Q6Q6R5 217 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CYB561D1Q8N8Q1 229 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 OR5C1Q8NGR4 320 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 MUCL1Q96DR8 90 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 GALNT14Q96FL9 552 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF385AQ96PM9 386 aaKnown RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 GPHA2Q96T91 129 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CHRNA10Q9GZZ6 450 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 GFOD1Q9NXC2 390 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 SDK2Q58EX2 2172 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 A0A0U1RQV5 110 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF729A6NN14 1252 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CA11O75493 328 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 CD27P26842 260 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 RBP2P50120 134 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 LSM6P62312 80 aaKnown RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 RUNX1Q01196 453 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 SHBQ15464 509 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 PHYHD1Q5SRE7 291 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 RHOVQ96L33 236 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 ST3GAL6Q9Y274 331 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 TMED3Q9Y3Q3 217 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 WSB1Q9Y6I7 421 aa9.79□□□□□ -0.84
SYNE1-237ENST00000539504 NCOA6Q14686 2063 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-237ENST00000539504 TGIF2-C20orf24A0A0A6YYL0 155 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 DHHO43323 396 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 UCP2P55851 309 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 RPL23AP62750 156 aaKnown RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF784Q8NCA9 323 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 Q8WTZ3 238 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF501Q96CX3 271 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 TP53RKQ96S44 253 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 V9GYS6 101 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 WDR87Q6ZQQ6 2873 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 IGSF23A1L1A6 192 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 AQP7P3A6NL99 342 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 SLC34A2O95436 690 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 CXCL1P09341 107 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 MALLQ13021 153 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 ENDOGQ14249 297 aaKnown RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 CNN3Q15417 329 aaKnown RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 TMEM123Q8N131 208 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 OR2M3Q8NG83 312 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 MSI2Q96DH6 328 aaKnown RBP9.78□□□□□ -0.84
SYNE1-237ENST00000539504 BOD1Q96IK1 185 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 C18orf12Q96KH6 178 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 BCO1Q9HAY6 547 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 PARPBPQ9NWS1 579 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 TREM2Q9NZC2 230 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 MYOTQ9UBF9 498 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 LRP4O75096 1905 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 IGHV1OR15-9A0A0B4J2B8 117 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 PATE4P0C8F1 98 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 KCNMB1Q16558 191 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms