RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PCDHGB5Q9Y5G0 923 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 HILPDAQ9Y5L2 63 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ORC6Q9Y5N6 252 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 IGKV1-27A0A075B6S5 117 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 TMEM82A0PJX8 343 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 A6NDX4 124 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 ODF3BA8MYP8 253 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 G3V4G9 280 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 CIB2O75838 187 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 ATP5HO75947 161 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 PRKACAP17612 351 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 DUSP1P28562 367 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 POLR2IP36954 125 aaKnown RBP11.9□□□□□ -0.5
VPS28-215ENST00000531924 SNU13P55769 128 aaKnown RBP11.9□□□□□ -0.5
VPS28-215ENST00000531924 BNIP1Q12981 228 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 IL18R1Q13478 541 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 HABP2Q14520 560 aaPredicted RBP11.9□□□□□ -0.5
VPS28-215ENST00000531924 TP53I3Q53FA7 332 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 MINOS1Q5TGZ0 78 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 TMEM244Q5VVB8 128 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 RDH10Q8IZV5 341 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 FAM58AQ8N1B3 248 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 PRSS35Q8N3Z0 413 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 DNAAF1Q8NEP3 725 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 EME1Q96AY2 570 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 CENPNQ96H22 339 aaPredicted RBP11.9□□□□□ -0.5
VPS28-215ENST00000531924 OR5M11Q96RB7 305 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 ZNF702PQ9H963 129 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 LINC00312Q9Y6C7 94 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 SESN1Q9Y6P5 492 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 MINOS1-NBL1R4GNA1 71 aa11.9□□□□□ -0.5
VPS28-215ENST00000531924 DAPL1A0PJW8 107 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 FUOMA2VDF0 154 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 MGST3O14880 152 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 XPNPEP2O43895 674 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 IGHA1P01876 353 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 BCL3P20749 454 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 ARHGDIBP52566 201 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 KCTD20Q7Z5Y7 419 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 TPRX1Q8N7U7 411 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 OR4F17Q8NGA8 305 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 FGGYQ96C11 551 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 R3HDM4Q96D70 268 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 OR4F4Q96R69 305 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 CLEC7AQ9BXN2 247 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 GABARAPL3Q9BY60 117 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 TMEM133Q9H2Q1 129 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 NEK6Q9HC98 313 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 RBFOX1Q9NWB1 397 aaKnown RBP11.89□□□□□ -0.51
VPS28-215ENST00000531924 OAZ3Q9UMX2 235 aa11.89□□□□□ -0.51
VPS28-215ENST00000531924 TRGV10A0A0A0MS01 117 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 IGHV2-26A0A0B4J1V2 119 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 TRBV2A0A0J9YWF9 115 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SAC3D1A6NKF1 404 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SIRPB1O00241 398 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SH2D1BO14796 132 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 CALCBP10092 127 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 CD28P10747 220 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 ATF1P18846 271 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 AZGP1P25311 298 aaKnown RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 HTR1DP28221 377 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 VDAC2P45880 294 aaPredicted RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 DYNLT3P51808 116 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 BEAN1Q3B7T3 259 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SPIN3Q5JUX0 258 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 CCBE1Q6UXH8 406 aaPredicted RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 LHFPL2Q6ZUX7 228 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 NDUFA11Q86Y39 141 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 OR2G2Q8NGZ5 317 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 TRUB1Q8WWH5 349 aaKnown RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 STMN2Q93045 179 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SPSB1Q96BD6 273 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 MRPL48Q96GC5 212 aaKnown RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 AKR1E2Q96JD6 320 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 MYCBPQ99417 103 aaPredicted RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 OSBPL10Q9BXB5 764 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 GAL3ST2Q9H3Q3 398 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 SEBOXQ9HB31 216 aaPredicted RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 EXOSC4Q9NPD3 245 aaKnown RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 SERTAD4Q9NUC0 356 aa11.88□□□□□ -0.51
VPS28-215ENST00000531924 UBE2J1Q9Y385 318 aaPredicted RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 PRKDCP78527 4128 aaKnown RBP11.88□□□□□ -0.51
VPS28-215ENST00000531924 MEGF11A6BM72 1044 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 SNTNA6NMZ2 147 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 HTR1AP08908 422 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 BRS3P32247 399 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 KIR3DL2P43630 455 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 NPBWR2P48146 333 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 P2RX3P56373 397 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 ZNF85Q03923 595 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 ZNF91Q05481 1191 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 SCN1BQ07699 218 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 KPNB1Q14974 876 aaKnown RBP11.87□□□□□ -0.51
VPS28-215ENST00000531924 OR52W1Q6IF63 320 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 UTS2BQ765I0 119 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 REC114Q7Z4M0 266 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 Q8N2B8 174 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 OR52N4Q8NGI2 321 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 OR13C3Q8NGS6 347 aa11.87□□□□□ -0.51
VPS28-215ENST00000531924 SGCDQ92629 289 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms