RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ZNF141Q15928 474 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MAPK14Q16539 360 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 SYPL1Q16563 259 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ZNF630Q2M218 657 aaPredicted RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 TRMT5Q32P41 509 aaKnown RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 PLPPR5Q32ZL2 321 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ARHGAP11BQ3KRB8 267 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 LINC01620Q4KN68 170 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 COQ5Q5HYK3 327 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 FAM120AOSQ5T036 256 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 SPATA46Q5T0L3 261 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 PDZK1Q5T2W1 519 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ATAD3BQ5T9A4 648 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 LIPNQ5VXI9 398 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 RAET1LQ5VY80 246 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 PVRIGQ6DKI7 326 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 FAHD2BQ6P2I3 314 aaPredicted RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 ZNF836Q6ZNA1 936 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 PLCZ1Q86YW0 608 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 RPRMLQ8N4K4 120 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 BBS1Q8NFJ9 593 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 STXBP6Q8NFX7 210 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 OR4K17Q8NGC6 315 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 OR5M1Q8NGP8 315 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 NEIL3Q8TAT5 605 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 TEX47Q8TBZ9 253 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MAL2Q969L2 176 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ROPN1LQ96C74 230 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 FAHD2AQ96GK7 314 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 SH3YL1Q96HL8 342 aaPredicted RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 TRNT1Q96Q11 434 aaKnown RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 ZNF184Q99676 751 aaPredicted RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 GPA33Q99795 319 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 UGT2B28Q9BY64 529 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MRPL13Q9BYD1 178 aaKnown RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 SLC38A1Q9H2H9 487 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 TPK1Q9H3S4 243 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 DSN1Q9H410 356 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 EXO5Q9H790 373 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 PALMDQ9NP74 551 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 C12orf4Q9NQ89 552 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 UBQLN4Q9NRR5 601 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MED11Q9P086 117 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ZNF835Q9Y2P0 537 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MEMO1Q9Y316 297 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 NDUFAF1Q9Y375 327 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 FAM215AQ9Y5M1 114 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 MGAQ8IWI9 3026 aa2.72□□□□□ -1.97
CD44-219ENST00000525685 ANKRD11Q6UB99 2663 aaPredicted RBP2.72□□□□□ -1.97
CD44-219ENST00000525685 IGHV7-81A0A0B4J1V7 117 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 A0A1B0GUH1 482 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CLDN24A6NM45 220 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 EVPLLA8MZ36 301 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 C5orf58C9J3I9 102 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SULT2B1O00204 365 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CCL21O00585 134 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 ABCD4O14678 606 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 ZNF264O43296 627 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 TPST2O60704 377 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CCDC22O60826 627 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SHOX2O60902 331 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 RBBP9O75884 186 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 MMP23AO75900 390 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CSTAP01040 98 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SEMG1P04279 462 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 IGF1P05019 195 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 TFPTP0C1Z6 253 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 COX4I1P13073 169 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 PRG2P13727 222 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 ZNF708P17019 499 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 GPX2P18283 190 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 PPIBP23284 216 aaKnown RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 HTR2AP28223 471 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 NUP62P37198 522 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 KIR2DS2P43631 304 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 LHX2P50458 406 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 GZMMP51124 257 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 P2RX1P51575 399 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CRISP3P54108 245 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 NUP107P57740 925 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CHRNB3Q05901 458 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 RIPPLY1Q0D2K3 151 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 LAGE3Q14657 143 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 QPRTQ15274 297 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 TOMM34Q15785 309 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 LIN52Q52LA3 116 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 C2orf83Q53S99 150 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CLVS2Q5SYC1 327 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 MRPL2Q5T653 305 aaKnown RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 KCNIP4Q6PIL6 250 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 LRRC74BQ6ZQY2 392 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 PPP1R27Q86WC6 154 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 VRK2Q86Y07 508 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 DOLPP1Q86YN1 238 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 GTPBP8Q8N3Z3 284 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 TMEM252Q8N6L7 170 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 OR8J3Q8NGG0 315 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 OR51G2Q8NGK0 314 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 OR52P1PQ8NH57 321 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 PHF10Q8WUB8 498 aaKnown RBP2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms