RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	RPS27	P42677	84 aa	Known RBP	5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	PTGES3	Q15185	160 aa	Known RBP	5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	RSPO1	Q2MKA7	263 aa	Predicted RBP	5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	KLHL12	Q53G59	568 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	TEX30	Q5JUR7	227 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	KDM4D	Q6B0I6	523 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	MAPK1IP1L	Q8NDC0	245 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	OR5L1	Q8NGL2	311 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	C10orf105	Q8TEF2	133 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	APOBEC3D	Q96AK3	386 aa	Predicted RBP	5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	ATF6B	Q99941	703 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	SMR3A	Q99954	134 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	PKP2	Q99959	881 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	PRRG3	Q9BZD7	231 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	GABARAPL1	Q9H0R8	117 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	SLC25A19	Q9HC21	320 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	TVP23B	Q9NYZ1	205 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	ENOPH1	Q9UHY7	261 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	COMMD3-BMI1	R4GMX3	469 aa		5.7	□□□□□ -1.5
SDCBP-208	ENST00000520228	ARID1A	O14497	2285 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228		A0A087X002	238 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	MSGN1	A6NI15	193 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	TIMM8A	O60220	97 aa	Predicted RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	GLCE	O94923	617 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	LY6G6D	O95868	133 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ACSM4	P0C7M7	580 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	CCL8	P80075	99 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	MRPS11	P82912	194 aa	Known RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	PSG7	Q13046	419 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	PCK2	Q16822	640 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	KRTAP27-1	Q3LI81	207 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	LINC01590	Q5TEZ4	76 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	DCXR	Q7Z4W1	244 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ERI1	Q8IV48	349 aa	Known RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ZNF786	Q8N393	782 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ZNF540	Q8NDQ6	660 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	BBS1	Q8NFJ9	593 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	DYRK2	Q92630	601 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	GTF3A	Q92664	365 aa	Known RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	RDH5	Q92781	318 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	SPTSSA	Q969W0	71 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	HAVCR1	Q96D42	359 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	CMBL	Q96DG6	245 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ZMYND19	Q96E35	227 aa	Predicted RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	PRAC1	Q96KF2	57 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	INTS14	Q96SY0	518 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	CIB1	Q99828	191 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	RBM4B	Q9BQ04	359 aa	Known RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	COPS4	Q9BT78	406 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	OSBPL10	Q9BXB5	764 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	CENPM	Q9NSP4	180 aa		5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	DDX28	Q9NUL7	540 aa	Known RBP	5.69	□□□□□ -1.5
SDCBP-208	ENST00000520228	ZSCAN5B	A6NJL1	495 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	LYNX1	G3V0Z9	82 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228		M0R135	149 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	TLX2	O43763	284 aa	Predicted RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PRKY	O43930	277 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	IGHV1-46	P01743	117 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	LYNX1	P0DP58	116 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PSKH1	P11801	424 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	KITLG	P21583	273 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	USF1	P22415	310 aa	Predicted RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	COL8A2	P25067	703 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	GIF	P27352	417 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	POLR2I	P36954	125 aa	Known RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	MAGEB1	P43366	347 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PRKX	P51817	358 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	DLK1	P80370	383 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	LOXL1	Q08397	574 aa	Predicted RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	APOF	Q13790	326 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	EIF2B1	Q14232	305 aa	Known RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	GGTLC2	Q14390	218 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	TMEM255A	Q5JRV8	349 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	SLC35D3	Q5M8T2	416 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	FFAR4	Q5NUL3	377 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	SLX4IP	Q5VYV7	408 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	DRAM2	Q6UX65	266 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	FBXW12	Q6X9E4	464 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228		Q71RC1	249 aa	Predicted RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	DPY19L4	Q7Z388	723 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	NAA40	Q86UY6	237 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	TIGD4	Q8IY51	512 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	OR6N2	Q8NGY6	317 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	ST7L	Q8TDW4	575 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	SLAMF6	Q96DU3	332 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	ZNF799	Q96GE5	643 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	TEAD3	Q99594	435 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	EGLN1	Q9GZT9	426 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	RIBC2	Q9H4K1	309 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	MARCH7	Q9H992	704 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	S100A14	Q9HCY8	104 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	SCRT2	Q9NQ03	307 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PTTG3P	Q9NZH4	202 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PURG	Q9UJV8	347 aa	Known RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	PYGO1	Q9Y3Y4	419 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	N6AMT1	Q9Y5N5	214 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	ORC6	Q9Y5N6	252 aa		5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	NIPBL	Q6KC79	2804 aa	eCLIP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	RAI1	Q7Z5J4	1906 aa	Predicted RBP	5.68	□□□□□ -1.5
SDCBP-208	ENST00000520228	CSPG4	Q6UVK1	2322 aa		5.67	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms