RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR2B11Q5JQS5 317 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 LY6G6FQ5SQ64 297 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 OR8U1Q8NH10 309 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 HPSE2Q8WWQ2 592 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM14DPA8MWL7 114 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 LPAR6P43657 344 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 RAC1P63000 192 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 H3F3AP84243 136 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 UNC119Q13432 240 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 BATFQ16520 125 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 CLEC12BQ2HXU8 276 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 PLPPR5Q32ZL2 321 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM41BQ5BJD5 291 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 DYRK2Q92630 601 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 VOPP1Q96AW1 172 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 C10orf35Q96D05 121 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 ARV1Q9H2C2 271 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 CABIN1Q9Y6J0 2220 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 FOSL2P15408 326 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 WIPI1Q5MNZ9 446 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 SPEM1Q8N4L4 309 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 CNEP1R1Q8N9A8 125 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 OR2M3Q8NG83 312 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 OR4F5Q8NH21 305 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 VWCEQ96DN2 955 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 THOC3Q96J01 351 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 OR4F4Q96R69 305 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 SAMD10Q9BYL1 202 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 RCC2Q9P258 522 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 GNG12Q9UBI6 72 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 LIPGQ9Y5X9 500 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 LHFPL6Q9Y693 200 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 MPPED1O15442 326 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 IL2RAP01589 272 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 GAPDHP04406 335 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 HKR1P10072 659 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 FAM3AP98173 230 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM267Q0VDI3 215 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 PTCRAQ6ISU1 281 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF808Q8N4W9 903 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 FBXO17Q96EF6 278 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 UCN2Q96RP3 112 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 RTL8AQ9BWD3 113 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 TMEM100Q9NV29 134 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 WBP1LQ9NX94 342 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 STARD10Q9Y365 291 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 DTYMKP23919 212 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 NOVA1P51513 510 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF528Q3MIS6 628 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 PIGYQ3MUY2 71 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 NCR3LG1Q68D85 454 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 LIN7CQ9NUP9 197 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 MDFIC2A0A1B0GVS7 189 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 YKT6O15498 198 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 DEDDO75618 318 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 IGHMP01871 453 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 PGA4P0DJD7 388 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 ARR3P36575 388 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 EWSR1Q01844 656 aaKnown RBP eCLIP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 CLN3Q13286 438 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 TRIM61Q5EBN2 209 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 H2BFWTQ7Z2G1 175 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 TBC1D26Q86UD7 250 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 ADAMTS17Q8TE56 1095 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 LURAP1Q96LR2 239 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 PATZ1Q9HBE1 687 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 MIOXQ9UGB7 285 aa7.38□□□□□ -1.23
LIMCH1-216ENST00000512820 SPAG17Q6Q759 2223 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 A0A1B0GTI1 187 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 PPYP01298 95 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 FABP4P15090 132 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 GABRA2P47869 451 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 DYNLT3P51808 116 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 WDR74Q6RFH5 385 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 SLC39A7Q92504 469 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF385AQ96PM9 386 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 ERRFI1Q9UJM3 462 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 LAMP3Q9UQV4 416 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 EP400Q96L91 3159 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 CLEC18AA5D8T8 446 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 NKX2-6A6NCS4 301 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 MSGN1A6NI15 193 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 TERTO14746 1132 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 C1QL1O75973 258 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 CD46P15529 392 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 ID4P47928 161 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 MNX1P50219 401 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 NHLH2Q02577 135 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 TBC1D28Q2M2D7 210 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 CLEC18CQ8NCF0 446 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 OR10P1Q8NGE3 313 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 OR4A16Q8NH70 328 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 APOBEC3DQ96AK3 386 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 CLDN23Q96B33 292 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF501Q96CX3 271 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 BTF3L4Q96K17 158 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 REG4Q9BYZ8 158 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 HEYLQ9NQ87 328 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 SERTAD4Q9NUC0 356 aa7.37□□□□□ -1.23
LIMCH1-216ENST00000512820 CLDN34H7C241 214 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms