RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 J3QLI3 93 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 CCRL2O00421 344 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 ARL6IP5O75915 188 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 KDM4BO94953 1096 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 CDRT1O95170 752 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 HAND1O96004 215 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 CSTBP04080 98 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 SFTPBP07988 381 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 AMY2BP19961 511 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 SERPINA2P20848 420 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 GABRR1P24046 479 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 PTGFRP43088 359 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 ZP1P60852 638 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 FABP5Q01469 135 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 COL10A1Q03692 680 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 SSX1Q16384 188 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 AWAT2Q6E213 333 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 UNQ9370/PRO34162Q6UXP9 181 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 ZNF561Q8N587 486 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 NKAIN3Q8N8D7 197 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 KCTD12Q96CX2 325 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 SDSLQ96GA7 329 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 EXOSC4Q9NPD3 245 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 TMEM160Q9NX00 188 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 ONECUT1Q9UBC0 465 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 ZNF222Q9UK12 451 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 MRPS28Q9Y2Q9 187 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 INSIG2Q9Y5U4 225 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 AUP1Q9Y679 476 aa9.48□□□□□ -0.89
LIMCH1-210ENST00000509454 A0A087WXM4 84 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 MEGF11A6BM72 1044 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 SIRPB1O00241 398 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 SH2D1BO14796 132 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 CRLF1O75462 422 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 GPX5O75715 221 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 ECDO95905 644 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 CHRM2P08172 466 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 ZNF44P15621 663 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 SRD5A1P18405 259 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 ADRA2CP18825 462 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 SRMP19623 302 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 CALRP27797 417 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 MTNR1BP49286 362 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 BMXP51813 675 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 SLC22A6Q4U2R8 563 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 GLT8D1Q68CQ7 371 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 TMEM91Q6ZNR0 172 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 C1QL2Q7Z5L3 287 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 FAM185AQ8N0U4 392 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 PXT1Q8NFP0 134 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 CNTD2Q9H8S5 307 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 HMG20AQ9NP66 347 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 NDUFB11Q9NX14 153 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 POLR3KQ9Y2Y1 108 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 MAB21L2Q9Y586 359 aa9.47□□□□□ -0.89
LIMCH1-210ENST00000509454 PPIAL4CA0A0B4J2A2 164 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 UCHL1P09936 223 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 MYL9P24844 172 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 EDDM3BP56851 147 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 FGF12P61328 243 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 EDDM3AQ14507 147 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 PDCD1Q15116 288 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 SPIN3Q5JUX0 258 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 CRIP3Q6Q6R5 217 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 GLIPR1L1Q6UWM5 242 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 TEX29Q8N6K0 151 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 OR4M1Q8NGD0 313 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 PHYHIPQ92561 330 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 PCGF1Q9BSM1 259 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 TMPRSS13Q9BYE2 586 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 RHOFQ9HBH0 211 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 PCDHB16Q9NRJ7 776 aa9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 RPUSD1Q9UJJ7 312 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 SF3B6Q9Y3B4 125 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-210ENST00000509454 FN1P02751 2386 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 KIR2DS1A0A191URI9 304 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 DEGS1O15121 323 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 GPR37O15354 613 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 FCN3O75636 299 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 PPIAL4GP0DN37 164 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 CAV3P56539 151 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 ARF6P62330 175 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 GRK1Q15835 563 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 METTL11BQ5VVY1 283 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 GDPD3Q7L5L3 318 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 LRRTM1Q86UE6 522 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 CMTM4Q8IZR5 234 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 PPP1R35Q8TAP8 253 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 NANPQ8TBE9 248 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 DCTN5Q9BTE1 182 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 CHST6Q9GZX3 395 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 PPIL3Q9H2H8 161 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 PLGRKTQ9HBL7 147 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 ING3Q9NXR8 418 aa9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 AK6Q9Y3D8 172 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-210ENST00000509454 IGHV3OR16-10A0A075B7F0 116 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 HSPB6O14558 160 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 ZNF780AO75290 641 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 CRTAPO75718 401 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 SC5DO75845 299 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms