RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RAB1BQ9H0U4 201 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 TRIM45Q9H8W5 580 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF492Q9P255 531 aa2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 COL27A1Q8IZC6 1860 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P28-201ENST00000507778 IGKV3D-11A0A0A0MRZ8 115 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 MGAT4DA6NG13 374 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 IGLL5B9A064 214 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 hCG_2039718K7EN88 272 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 K7EPK0 472 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 TSPOAP1O95153 1857 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 KLHL2O95198 593 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 INAFM2P0DMQ5 153 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 ACOT2P49753 483 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 ETV1P50549 477 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 CCL23P55773 120 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 VSNL1P62760 191 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 FMODQ06828 376 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 GPR176Q14439 515 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 TTMPQ5BVD1 217 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 SSX6Q7RTT6 188 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 DRAXINQ8NBI3 349 aaPredicted RBP2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR8G5Q8NG78 346 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR4C13Q8NGP0 309 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 BLNKQ8WV28 456 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 TVP23CQ96ET8 276 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 PLA2G12AQ9BZM1 189 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 DIABLOQ9NR28 239 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 CLEC2DQ9UHP7 191 aa2.04□□□□□ -2.08
HMGB1P28-201ENST00000507778 SCN1AP35498 2009 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 LOC100506127A0A0U1RQW1 187 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 CD300LBA8K4G0 201 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 C4orf51C9J302 202 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 APOA1P02647 267 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF35P13682 527 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 IL12BP29460 328 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 RAB38P57729 211 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 Q3ZCU0 254 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 Q499Y3 187 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ACTBL2Q562R1 376 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 LDLRAD2Q5SZI1 272 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF773Q6PK81 442 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ADM2Q7Z4H4 148 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 TMEM144Q7Z5S9 345 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF664Q8N3J9 261 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR6K3Q8NGY3 331 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 NELFBQ8WX92 580 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 FXYD5Q96DB9 178 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 OR2V2Q96R30 315 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 TRAPPC1Q9Y5R8 145 aa2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 ZNF706Q9Y5V0 76 aaPredicted RBP2.03□□□□□ -2.08
HMGB1P28-201ENST00000507778 GPR179Q6PRD1 2367 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 NRCAMQ92823 1304 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 A0A1B0GW15 77 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 A0A1W2PNN7 141 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 RBFOX3A6NFN3 312 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 GYG2O15488 501 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 IGLV6-57P01721 117 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 SCGB1C2P0DMR2 95 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 PTHLHP12272 177 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 MLNP12872 115 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 CCL2P13500 99 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 PRTN3P24158 256 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 TSPAN5P62079 268 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 ENDOGQ14249 297 aaKnown RBP2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 DEFB134Q4QY38 66 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 SPIN3Q5JUX0 258 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 LIN9Q5TKA1 542 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 BRD3OSQ6XYD6 125 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 PAGE2Q7Z2X7 111 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 GALNT10Q86SR1 603 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 OR8S1Q8NH09 359 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 SCGB1C1Q8TD33 95 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 FMC1Q96HJ9 113 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 TM2D3Q9BRN9 247 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 ANAPC13Q9BS18 74 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 DUSP21Q9H596 190 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 PLEKHA1Q9HB21 404 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 TMBIM4Q9HC24 238 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 AGPAT3Q9NRZ7 376 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 ZNF391Q9UJN7 358 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 SLC22A14Q9Y267 594 aa2.02□□□□□ -2.09
HMGB1P28-201ENST00000507778 BAZ1BQ9UIG0 1483 aaKnown RBP2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 NOS1P29475 1434 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 H3BQ85 93 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 C15orf65H3BRN8 121 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 K7ERS5 55 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 ISLRO14498 428 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 MYO1DO94832 1006 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 SOD3P08294 240 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 P0C880 135 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 HRES1P13985 223 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 COL8A2P25067 703 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 CD34P28906 385 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 KLF3P57682 345 aaPredicted RBP2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 IHHQ14623 411 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 TAF9Q16594 264 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 TMEM241Q24JQ0 296 aa2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 ZNF660Q6AZW8 331 aaPredicted RBP2.01□□□□□ -2.09
HMGB1P28-201ENST00000507778 HBMQ6B0K9 141 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms