RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 NDRG2Q9UN36 371 aaKnown RBP2.49□□□□□ -2.01
SMC4-224ENST00000494612 FLVCR2Q9UPI3 526 aa2.49□□□□□ -2.01
SMC4-224ENST00000494612 SAR1BQ9Y6B6 198 aa2.49□□□□□ -2.01
SMC4-224ENST00000494612 KIF26AQ9ULI4 1882 aaPredicted RBP2.49□□□□□ -2.01
SMC4-224ENST00000494612 MAP1BP46821 2468 aaKnown RBP2.49□□□□□ -2.01
SMC4-224ENST00000494612 EPG5Q9HCE0 2579 aa2.49□□□□□ -2.01
SMC4-224ENST00000494612 COL1A2P08123 1366 aa2.49□□□□□ -2.01
SMC4-224ENST00000494612 NCOR2Q9Y618 2525 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 IGKV1-27A0A075B6S5 117 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 A0A1W2PRD5 423 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ERICH2A1L162 156 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 OR5H1A6NKK0 313 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 PDZK1P1A8MUH7 402 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ANKRD65E5RJM6 399 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 RPL36A-HNRNPH2H7BZ11 118 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 PSMD11O00231 422 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 POLR1CO15160 346 aaPredicted RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 RRP8O43159 456 aaKnown RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 GLSO94925 669 aaPredicted RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 RCBTB2O95199 551 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 FARS2O95363 451 aaKnown RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 IVLP07476 585 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ZNF14P17017 642 aaPredicted RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 GABRR2P28476 465 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 LCN2P80188 198 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 LIN9Q5TKA1 542 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 AP1ARQ63HQ0 302 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 H3F3CQ6NXT2 135 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 UNC93AQ86WB7 457 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 FAM58AQ8N1B3 248 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 FBXO36Q8NEA4 188 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 OR51L1Q8NGJ5 315 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 OR13C9Q8NGT0 318 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 LRRC20Q8TCA0 184 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 FGF13Q92913 245 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 RERGQ96A58 199 aaPredicted RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 SLC25A46Q96AG3 418 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 CLDN23Q96B33 292 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ATP6V1G3Q96LB4 118 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 OPALINQ96PE5 141 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 SCGB3A2Q96PL1 93 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 RSG1Q9BU20 258 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 GAL3ST2Q9H3Q3 398 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ZNF302Q9NR11 478 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 HEBP1Q9NRV9 189 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ZNHIT6Q9NWK9 470 aaKnown RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 FARSAQ9Y285 508 aaKnown RBP2.48□□□□□ -2.01
SMC4-224ENST00000494612 GREB1Q4ZG55 1949 aa2.48□□□□□ -2.01
SMC4-224ENST00000494612 ACACBO00763 2458 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 USP24Q9UPU5 2620 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 NBEAQ8NFP9 2946 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 EP300Q09472 2414 aaPredicted RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 CHD6Q8TD26 2715 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 A0A0D9SFI3 127 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 A6NDN8 102 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ZNF879B4DU55 563 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 POLR3GO15318 223 aaPredicted RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 CCL16O15467 120 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 KDELR3O43731 214 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 CYTH3O43739 400 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 EIF1BO60739 113 aaKnown RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 MPDU1O75352 247 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 IL1RNP18510 177 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 RAB5AP20339 215 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 MYL9P24844 172 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 PFN2P35080 140 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 MYCNOSP40205 109 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 EIF1P41567 113 aaKnown RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 CD151P48509 253 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 CLDN18P56856 261 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ATP6V0D1P61421 351 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ZNF816Q0VGE8 651 aaPredicted RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 TRDNQ13061 729 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 TFDP2Q14188 446 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 DMC1Q14565 340 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 TSC22D1Q15714 1073 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 RPEL1Q2QD12 228 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 IGFL1Q6UW32 110 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 MRPL21Q7Z2W9 205 aaKnown RBP2.47□□□□□ -2.01
SMC4-224ENST00000494612 FAM122BQ7Z309 247 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 NEGR1Q7Z3B1 354 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 MDP1Q86V88 176 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 APRG1Q8IVJ8 170 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 KIF2BQ8N4N8 673 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 OR10W1Q8NGF6 305 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ITFG1Q8TB96 612 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 RXFP4Q8TDU9 374 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ASZ1Q8WWH4 475 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ING5Q8WYH8 240 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 NAT6Q93015 286 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 ISOC2Q96AB3 205 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 TMIGD2Q96BF3 282 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 MSANTD3Q96H12 275 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 BTN2A3PQ96KV6 586 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 C9orf72Q96LT7 481 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 C18orf15Q96N68 181 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 CSPG4P5Q96PW8 444 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 TMEM175Q9BSA9 504 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 TM6SF2Q9BZW4 377 aa2.47□□□□□ -2.01
SMC4-224ENST00000494612 C1orf198Q9H425 327 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms