RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 APOL4Q9BPW4 351 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 CHST5Q9GZS9 411 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 SEBOXQ9HB31 216 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-213ENST00000493475 SERTAD4Q9NUC0 356 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 COPS3Q9UNS2 423 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 HILPDAQ9Y5L2 63 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 PRKDCP78527 4128 aaKnown RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 METTL15A6NJ78 407 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 G3V2T6 193 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 M0QZK8 103 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 MGST3O14880 152 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 PRKYO43930 277 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 HAND1O96004 215 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 RPSAP08865 295 aaKnown RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 CD28P10747 220 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 FCGR1AP12314 374 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF20P17024 532 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 CCL1P22362 96 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 MNDAP41218 407 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 ERVK11-1P61568 191 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 TMED1Q13445 227 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 DCTN2Q13561 401 aaKnown RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 SPIN3Q5JUX0 258 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 CCDC144NLQ6NUI1 221 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 FAHD1Q6P587 224 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 SLC25A26Q70HW3 274 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 C11orf42Q8N5U0 333 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 DNAAF1Q8NEP3 725 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 PIFOQ8TCI5 191 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 SLAMF9Q96A28 289 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 MRPL48Q96GC5 212 aaKnown RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 OR5M11Q96RB7 305 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 CITED2Q99967 270 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 MMP28Q9H239 520 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM133Q9H2Q1 129 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 LIN7BQ9HAP6 207 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 ADGRL4Q9HBW9 690 aa9.34□□□□□ -0.91
COL6A3-213ENST00000493475 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 ZMAT5Q9UDW3 170 aaKnown RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 UBE2J1Q9Y385 318 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-213ENST00000493475 IGHV2-26A0A0B4J1V2 119 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 TCRBV3S1A0A5B6 114 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 LEUTXA8MZ59 168 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 TOR1AO14656 332 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 SH2D1BO14796 132 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 ZNF737O75373 536 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 ERP29P30040 261 aaKnown RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 RASSF2P50749 326 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 RAB13P51153 203 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 KPNB1Q14974 876 aaKnown RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 ODF4Q2M2E3 257 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 LINC01559Q495D7 138 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 TMEM244Q5VVB8 128 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 Q6ZPA2 131 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 Q6ZSR3 168 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 LHFPL2Q6ZUX7 228 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 FAM58AQ8N1B3 248 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 LYG1Q8N1E2 194 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 BATF2Q8N1L9 274 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 OR10H4Q8NGA5 316 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 OR5AU1Q8NGC0 362 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 SPSB1Q96BD6 273 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 CPNE2Q96FN4 548 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 IL4I1Q96RQ9 567 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 CADM1Q9BY67 442 aaKnown RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 RHOFQ9HBH0 211 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 PCDHB16Q9NRJ7 776 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 DPM3Q9P2X0 92 aa9.33□□□□□ -0.92
COL6A3-213ENST00000493475 MRM2Q9UI43 246 aaKnown RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 TSSC4Q9Y5U2 329 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-213ENST00000493475 TRBV2A0A0J9YWF9 115 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 A0A1B0GTI1 187 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 TCRBV4S1A1TA0A5B7 111 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 A6NIN4 97 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 SNTNA6NMZ2 147 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 SRSF10O75494 262 aaKnown RBP9.32□□□□□ -0.92
COL6A3-213ENST00000493475 T-ENOLP0DO92 83 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 FASP25445 335 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 PAX6P26367 422 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 HTR1FP30939 366 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 POU3F4P49335 361 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 PRRX1P54821 245 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 DLX6P56179 175 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 MTCP1P56278 107 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 P2RX3P56373 397 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 HABP2Q14520 560 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-213ENST00000493475 OXLD1Q5BKU9 147 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 KHDC1LQ5JSQ8 128 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 AADACL4Q5VUY2 407 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 KCTD20Q7Z5Y7 419 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 CATSPERDQ86XM0 798 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 OR4D6Q8NGJ1 314 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 PHF21AQ96BD5 680 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 RCC1LQ96I51 464 aaKnown RBP9.32□□□□□ -0.92
COL6A3-213ENST00000493475 TBX5Q99593 518 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 WNT10AQ9GZT5 417 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 EXOSC4Q9NPD3 245 aaKnown RBP9.32□□□□□ -0.92
COL6A3-213ENST00000493475 MTCH1Q9NZJ7 389 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 POMPQ9Y244 141 aa9.32□□□□□ -0.92
COL6A3-213ENST00000493475 AMMECR1Q9Y4X0 333 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms