RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 COX5BP10606 129 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 MAGEA2P43356 314 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 ERFP50548 548 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 BAXQ07812 192 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 COQ5Q5HYK3 327 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 OR8J2Q8NGG1 315 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 HGDQ93099 445 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 EXOSC8Q96B26 276 aaKnown RBP3.18□□□□□ -1.9
VPS13A-212ENST00000493341 C18orf15Q96N68 181 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 HBEGFQ99075 208 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 PITX2Q99697 317 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 PARD6GQ9BYG4 376 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-212ENST00000493341 UCK1Q9HA47 277 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 NEU3Q9UQ49 428 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 UBR1Q8IWV7 1749 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 NLRP1Q9C000 1473 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 NPHP4O75161 1426 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-212ENST00000493341 DAPK1P53355 1430 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 LTBP4Q8N2S1 1624 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 IGKV6D-21A0A0A0MT36 114 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 IGHV6-1A0A0B4J1U7 121 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 FGF16O43320 207 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 ANGPTL7O43827 346 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 AHSA1O95433 338 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 PSKH1P11801 424 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 M6PRP20645 277 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 F8A1P23610 371 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 TSPOP30536 169 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 GRPRP30550 384 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CCL23P55773 120 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DLX6P56179 175 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 NDPQ00604 133 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 MED21Q13503 144 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 RSBN1Q5VWQ0 802 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 FAM45BPQ6NSW5 357 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 OR4M2Q8NGB6 313 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 OR5W2Q8NH69 310 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 PDXPQ96GD0 296 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 FAM210BQ96KR6 192 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF382Q96SR6 550 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CDX2Q99626 313 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 SLC17A9Q9BYT1 436 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DDX19AQ9NUU7 478 aaKnown RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 TET3O43151 1660 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 BRD4O60885 1362 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 TDRD6O60522 2096 aaKnown RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 MED14O60244 1454 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 A0A1B0GVX0 72 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 A0A1W2PP18 115 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 EFCAB9A8MZ26 197 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CHST10O43529 356 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 ENTPD6O75354 484 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 SPAG7O75391 227 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 OCM2P0CE71 109 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 PSMB9P28065 219 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 GCLMP48507 274 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CLDN12P56749 244 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 GRB2P62993 217 aaKnown RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 PRDX1Q06830 199 aaKnown RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DNAL1Q4LDG9 190 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DRAM2Q6UX65 266 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DCXRQ7Z4W1 244 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 TMEM156Q8N614 296 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 TMEM251Q8N6I4 163 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 OR5L1Q8NGL2 311 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 DDIT4LQ96D03 193 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CMTM5Q96DZ9 223 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 YIPF6Q96EC8 236 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 FMC1Q96HJ9 113 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 SPACA5Q96QH8 159 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 KRTAP1-5Q9BYS1 174 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 API5Q9BZZ5 524 aaKnown RBP3.17□□□□□ -1.9
VPS13A-212ENST00000493341 MFSD1Q9H3U5 465 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF222Q9UK12 451 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 IQGAP3Q86VI3 1631 aa3.17□□□□□ -1.9
VPS13A-212ENST00000493341 CARMIL3Q8ND23 1372 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 EFCAB6Q5THR3 1501 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 ERVK-7P63135 1459 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 PIK3C2BO00750 1634 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 OR5H1A6NKK0 313 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 OR2AT4A6NND4 320 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 SLC31A1O15431 190 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF861PO60384 105 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 EIF1BO60739 113 aaKnown RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 HPGDSO60760 199 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 FOXH1O75593 365 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 GCM2O75603 506 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 IGKV3-15P01624 115 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 IGHV1-8P0DP01 117 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF19P17023 458 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 IL3RAP26951 378 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 PRSS3P35030 304 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 EIF1P41567 113 aaKnown RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 RAB25P57735 213 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 RPL10AP62906 217 aaKnown RBP3.16□□□□□ -1.9
VPS13A-212ENST00000493341 CTAG1AP78358 180 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 RNF212Q495C1 297 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 AP1ARQ63HQ0 302 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 OR4M1Q8NGD0 313 aa3.16□□□□□ -1.9
VPS13A-212ENST00000493341 MRPL48Q96GC5 212 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms