RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 KLHL12Q53G59 568 aa2.55□□□□□ -2
XRN1-213ENST00000489241 RBM48Q5RL73 367 aaKnown RBP2.55□□□□□ -2
XRN1-213ENST00000489241 TPGS1Q6ZTW0 290 aa2.55□□□□□ -2
XRN1-213ENST00000489241 SSX7Q7RTT5 188 aa2.55□□□□□ -2
XRN1-213ENST00000489241 CRLF3Q8IUI8 442 aa2.55□□□□□ -2
XRN1-213ENST00000489241 ACBD4Q8NC06 268 aa2.55□□□□□ -2
XRN1-213ENST00000489241 CCL17Q92583 94 aa2.55□□□□□ -2
XRN1-213ENST00000489241 ZNF514Q96K75 400 aaPredicted RBP2.55□□□□□ -2
XRN1-213ENST00000489241 RNF157Q96PX1 679 aa2.55□□□□□ -2
XRN1-213ENST00000489241 ZNF251Q9BRH9 671 aa2.55□□□□□ -2
XRN1-213ENST00000489241 MS4A8Q9BY19 250 aa2.55□□□□□ -2
XRN1-213ENST00000489241 UPF3BQ9BZI7 483 aaKnown RBP2.55□□□□□ -2
XRN1-213ENST00000489241 SIGLEC1Q9BZZ2 1709 aa2.55□□□□□ -2
XRN1-213ENST00000489241 MFSD1Q9H3U5 465 aa2.55□□□□□ -2
XRN1-213ENST00000489241 DSN1Q9H410 356 aa2.55□□□□□ -2
XRN1-213ENST00000489241 CYTL1Q9NRR1 136 aa2.55□□□□□ -2
XRN1-213ENST00000489241 RBM22Q9NW64 420 aaKnown RBP eCLIP2.55□□□□□ -2
XRN1-213ENST00000489241 TAS2R13Q9NYV9 303 aa2.55□□□□□ -2
XRN1-213ENST00000489241 KIAA0232Q92628 1395 aa2.54□□□□□ -2
XRN1-213ENST00000489241 TMEM213A2RRL7 107 aa2.54□□□□□ -2
XRN1-213ENST00000489241 A8MWL6 223 aa2.54□□□□□ -2
XRN1-213ENST00000489241 F8VZ95 297 aa2.54□□□□□ -2
XRN1-213ENST00000489241 UPK2O00526 184 aa2.54□□□□□ -2
XRN1-213ENST00000489241 FFAR1O14842 300 aa2.54□□□□□ -2
XRN1-213ENST00000489241 OR2A4O95047 310 aa2.54□□□□□ -2
XRN1-213ENST00000489241 SNAP29O95721 258 aa2.54□□□□□ -2
XRN1-213ENST00000489241 MEF2CQ06413 473 aaPredicted RBP2.54□□□□□ -2
XRN1-213ENST00000489241 ZNF616Q08AN1 781 aa2.54□□□□□ -2
XRN1-213ENST00000489241 TMEM249Q2WGJ8 235 aa2.54□□□□□ -2
XRN1-213ENST00000489241 COX19Q49B96 90 aa2.54□□□□□ -2
XRN1-213ENST00000489241 ATP6AP1LQ52LC2 224 aa2.54□□□□□ -2
XRN1-213ENST00000489241 ZNF880Q6PDB4 577 aa2.54□□□□□ -2
XRN1-213ENST00000489241 IGFL3Q6UXB1 125 aa2.54□□□□□ -2
XRN1-213ENST00000489241 UNQ9165/PRO28630Q6UXU0 137 aa2.54□□□□□ -2
XRN1-213ENST00000489241 USP50Q70EL3 339 aaPredicted RBP2.54□□□□□ -2
XRN1-213ENST00000489241 ITPRIPQ8IWB1 547 aa2.54□□□□□ -2
XRN1-213ENST00000489241 STK40Q8N2I9 435 aa2.54□□□□□ -2
XRN1-213ENST00000489241 ZNF555Q8NEP9 628 aa2.54□□□□□ -2
XRN1-213ENST00000489241 OR52N1Q8NH53 320 aa2.54□□□□□ -2
XRN1-213ENST00000489241 FAM45AQ8TCE6 357 aa2.54□□□□□ -2
XRN1-213ENST00000489241 PGLYRP3Q96LB9 341 aa2.54□□□□□ -2
XRN1-213ENST00000489241 DERL3Q96Q80 235 aa2.54□□□□□ -2
XRN1-213ENST00000489241 OR2A7Q96R45 310 aa2.54□□□□□ -2
XRN1-213ENST00000489241 HBEGFQ99075 208 aa2.54□□□□□ -2
XRN1-213ENST00000489241 PITX2Q99697 317 aa2.54□□□□□ -2
XRN1-213ENST00000489241 SPIN2AQ99865 258 aa2.54□□□□□ -2
XRN1-213ENST00000489241 SPIN2BQ9BPZ2 258 aa2.54□□□□□ -2
XRN1-213ENST00000489241 SUCNR1Q9BXA5 334 aa2.54□□□□□ -2
XRN1-213ENST00000489241 TSPOAP1O95153 1857 aa2.54□□□□□ -2
XRN1-213ENST00000489241 NRCAMQ92823 1304 aa2.53□□□□□ -2
XRN1-213ENST00000489241 C7orf66A4D0T2 115 aa2.53□□□□□ -2
XRN1-213ENST00000489241 BTNL10A8MVZ5 291 aa2.53□□□□□ -2
XRN1-213ENST00000489241 J3QLI3 93 aa2.53□□□□□ -2
XRN1-213ENST00000489241 GYG2O15488 501 aa2.53□□□□□ -2
XRN1-213ENST00000489241 AQP9O43315 295 aa2.53□□□□□ -2
XRN1-213ENST00000489241 SEC11BP0C7V7 166 aa2.53□□□□□ -2
XRN1-213ENST00000489241 LIMS3P0CW19 117 aa2.53□□□□□ -2
XRN1-213ENST00000489241 LIMS4P0CW20 117 aa2.53□□□□□ -2
XRN1-213ENST00000489241 ZNF35P13682 527 aa2.53□□□□□ -2
XRN1-213ENST00000489241 NTF3P20783 257 aa2.53□□□□□ -2
XRN1-213ENST00000489241 PLTPP55058 493 aa2.53□□□□□ -2
XRN1-213ENST00000489241 CCL23P55773 120 aa2.53□□□□□ -2
XRN1-213ENST00000489241 UBE2G2P60604 165 aa2.53□□□□□ -2
XRN1-213ENST00000489241 TPM4P67936 248 aa2.53□□□□□ -2
XRN1-213ENST00000489241 BNIP2Q12982 314 aa2.53□□□□□ -2
XRN1-213ENST00000489241 SSX1Q16384 188 aa2.53□□□□□ -2
XRN1-213ENST00000489241 TIMM23BQ5SRD1 257 aa2.53□□□□□ -2
XRN1-213ENST00000489241 ZNF678Q5SXM1 525 aa2.53□□□□□ -2
XRN1-213ENST00000489241 KHDRBS2Q5VWX1 349 aaKnown RBP2.53□□□□□ -2
XRN1-213ENST00000489241 FAM183BPQ6ZVS7 135 aa2.53□□□□□ -2
XRN1-213ENST00000489241 OSR2Q8N2R0 312 aa2.53□□□□□ -2
XRN1-213ENST00000489241 TMEM105Q8N8V8 129 aa2.53□□□□□ -2
XRN1-213ENST00000489241 SLC26A10Q8NG04 563 aa2.53□□□□□ -2
XRN1-213ENST00000489241 YIPF6Q96EC8 236 aa2.53□□□□□ -2
XRN1-213ENST00000489241 MRAP2Q96G30 205 aa2.53□□□□□ -2
XRN1-213ENST00000489241 ASCL3Q9NQ33 180 aa2.53□□□□□ -2
XRN1-213ENST00000489241 C1orf109Q9NX04 203 aa2.53□□□□□ -2
XRN1-213ENST00000489241 PUS1Q9Y606 427 aaKnown RBP eCLIP2.53□□□□□ -2
XRN1-213ENST00000489241 PLA2R1Q13018 1463 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 CABIN1Q9Y6J0 2220 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 IGLV4-60A0A075B6I1 120 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 IGKV2-28A0A075B6P5 120 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 A0A1W2PRG6 482 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 LGALS9O00182 355 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 OR7C2O60412 319 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 MPZL2O60487 215 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 LHBP01229 141 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 IGKV2D-28P01615 120 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 TPM3P06753 285 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 SNRPAP09012 282 aaKnown RBP2.52□□□□□ -2.01
XRN1-213ENST00000489241 HBG1P69891 147 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 HBG2P69892 147 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 ATP5G2Q06055 141 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 PRDX1Q06830 199 aaKnown RBP2.52□□□□□ -2.01
XRN1-213ENST00000489241 BTN1A1Q13410 526 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 COTL1Q14019 142 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 ELOCQ15369 112 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 ZNHIT3Q15649 155 aaPredicted RBP2.52□□□□□ -2.01
XRN1-213ENST00000489241 LAMTOR1Q6IAA8 161 aa2.52□□□□□ -2.01
XRN1-213ENST00000489241 GALNT10Q86SR1 603 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms