RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 P4HTMQ9NXG6 502 aa15.54■□□□□ 0.08
VIM-206ENST00000487938 hCG_38984A0A1B0GV85 526 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 PINLYPA6NC86 204 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 FUT6P51993 359 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 KRTAP27-1Q3LI81 207 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 SLC23A3Q6PIS1 610 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 C5orf24Q7Z6I8 188 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 SLC2A9Q9NRM0 540 aa15.53■□□□□ 0.08
VIM-206ENST00000487938 TNRC6BQ9UPQ9 1833 aaKnown RBP15.52■□□□□ 0.08
VIM-206ENST00000487938 OR8U9P0C7N5 309 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 EDN3P14138 238 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 NPBWR2P48146 333 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 OR52M1Q8NGK5 317 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 OR8U1Q8NH10 309 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 ADGRG7Q96K78 797 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 PRELID3BQ9Y3B1 194 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 COL6A3P12111 3177 aa15.52■□□□□ 0.08
VIM-206ENST00000487938 TCN2P20062 427 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 GDF1P27539 372 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 DUSP3P51452 185 aaPredicted RBP15.52■□□□□ 0.07
VIM-206ENST00000487938 AKIRIN2Q53H80 203 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 C9orf135Q5VTT2 229 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 CPEB3Q8NE35 698 aaKnown RBP15.52■□□□□ 0.07
VIM-206ENST00000487938 GLYATL2Q8WU03 294 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 ZNF442Q9H7R0 627 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 ZNF286AQ9HBT8 521 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 WFDC1Q9HC57 220 aa15.52■□□□□ 0.07
VIM-206ENST00000487938 SHANK1Q9Y566 2161 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 LAMTOR5O43504 91 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 NDUFA2O43678 99 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 CCNOP22674 350 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 MALLQ13021 153 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 SWI5Q1ZZU3 235 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 TRIM61Q5EBN2 209 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 FAM76BQ5HYJ3 339 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 ACER2Q5QJU3 275 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 GALNT14Q96FL9 552 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 SMOC1Q9H4F8 434 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 PLEKHA2Q9HB19 425 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 TCFL5Q9UL49 500 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 MUC3AQ02505 3323 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 E5RGE8 158 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 PHF1O43189 567 aaPredicted RBP15.51■□□□□ 0.07
VIM-206ENST00000487938 OR7C1O76099 320 aaPredicted RBP15.51■□□□□ 0.07
VIM-206ENST00000487938 GAPDHP04406 335 aaKnown RBP15.51■□□□□ 0.07
VIM-206ENST00000487938 CD5P06127 495 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 AADACP22760 399 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 RFC3P40938 356 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 ABLIM2Q6H8Q1 611 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 LIAT1Q6ZQX7 453 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 SLC25A26Q70HW3 274 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 OR10Z1Q8NGY1 313 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 C18orf12Q96KH6 178 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 PARP11Q9NR21 331 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 NSG2Q9Y328 171 aa15.51■□□□□ 0.07
VIM-206ENST00000487938 PDCD6O75340 191 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 PCBD1P61457 104 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 SRYQ05066 204 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 IGSF11Q5DX21 431 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 SPINK14Q6IE38 97 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 ZNF611Q8N823 705 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 MSI2Q96DH6 328 aaKnown RBP15.5■□□□□ 0.07
VIM-206ENST00000487938 ZNF816-ZNF321PA0A0X1KG74 233 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 CCL2P13500 99 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 F2RL1P55085 397 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 RBM11P57052 281 aaKnown RBP15.5■□□□□ 0.07
VIM-206ENST00000487938 NHLH2Q02577 135 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 PEAR1Q5VY43 1037 aaPredicted RBP15.5■□□□□ 0.07
VIM-206ENST00000487938 MEX3BQ6ZN04 569 aaKnown RBP15.5■□□□□ 0.07
VIM-206ENST00000487938 UBAC2Q8NBM4 344 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 KIRREL1Q96J84 757 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 AKR1E2Q96JD6 320 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 SUCNR1Q9BXA5 334 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 ZFP57Q9NU63 452 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 ZDHHC8Q9ULC8 765 aa15.5■□□□□ 0.07
VIM-206ENST00000487938 A0A096LPE4 126 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 A0A1W2PPZ6 126 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 H7C1Q1 480 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 NME2P1O60361 137 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 MMP7P09237 267 aaPredicted RBP15.49■□□□□ 0.07
VIM-206ENST00000487938 FHITP49789 147 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 DAZAP2Q15038 168 aaPredicted RBP15.49■□□□□ 0.07
VIM-206ENST00000487938 OR8B8Q15620 311 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 FBXW12Q6X9E4 464 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 ETV3LQ6ZN32 361 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 RAB11FIP2Q7L804 512 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 TIPARPQ7Z3E1 657 aaKnown RBP15.49■□□□□ 0.07
VIM-206ENST00000487938 ZNF100Q8IYN0 542 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 SECTM1Q8WVN6 248 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 MOB3AQ96BX8 217 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 RGCCQ9H4X1 137 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 STARD10Q9Y365 291 aa15.49■□□□□ 0.07
VIM-206ENST00000487938 PRKACAP17612 351 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 FUT3P21217 361 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 CYB561P49447 251 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 ASCL1P50553 236 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 LINC00518Q8N0U6 118 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 TP53RKQ96S44 253 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 SYT3Q9BQG1 590 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 ZNF391Q9UJN7 358 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms