RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PJVKQ0ZLH3 352 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CHIT1Q13231 466 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TMEM244Q5VVB8 128 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 WSCD1Q658N2 575 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR10K2Q6IF99 312 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SMARCD3Q6STE5 483 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TMEM205Q6UW68 189 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 MBOAT1Q6ZNC8 495 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TMCO2Q7Z6W1 182 aaPredicted RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 NAA40Q86UY6 237 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 MISPQ8IVT2 679 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 BAP18Q8IXM2 172 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 PRR22Q8IZ63 422 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 ZNF565Q8N9K5 539 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR7G2Q8NG99 324 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR4K5Q8NGD3 323 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR13C4Q8NGS5 318 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR2T27Q8NH04 317 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR4C6Q8NH72 309 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 NANPQ8TBE9 248 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SFXN5Q8TD22 340 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 THEM6Q8WUY1 208 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 PSMG2Q969U7 264 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 OR5B2Q96R09 309 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 C2orf88Q9BSF0 95 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 ZNF471Q9BX82 626 aaPredicted RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 OR51V1Q9H2C8 321 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 ASB8Q9H765 288 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 HRASLSQ9HDD0 168 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TREM1Q9NP99 234 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SIRT7Q9NRC8 400 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 UQCC1Q9NVA1 299 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 ANAPC11Q9NYG5 84 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CLEC2DQ9UHP7 191 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CLEC4AQ9UMR7 237 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TP53TG5Q9Y2B4 290 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 RPH3AQ9Y2J0 694 aaPredicted RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 V9GYS6 101 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 MYO18AQ92614 2054 aaKnown RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 A0A0U1RQS6 177 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 RNF222A6NCQ9 220 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 BTBD17A6NE02 478 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR5H14A6NHG9 310 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 GABRR3A8MPY1 467 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TRDCB7Z8K6 153 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CLDN5O00501 218 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TNFSF11O14788 317 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 PPP1R2P9O14990 202 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 FGF16O43320 207 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CDC40O60508 579 aaKnown RBP eCLIP4.22□□□□□ -1.73
USP40-213ENST00000483216 LRP3O75074 770 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SYNGR4O95473 234 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 PTBP3O95758 552 aaKnown RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 PNPP00491 289 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CFDP00746 253 aaPredicted RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 CRYBA1P05813 215 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 P0C879 139 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 LIMS3P0CW19 117 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 LIMS4P0CW20 117 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CT45A10P0DMU9 189 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 HPGDP15428 266 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 GNSP15586 552 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ZNF19P17023 458 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CXCL2P19875 107 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 FGF7P21781 194 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 IDSP22304 550 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 LAP3P28838 519 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 NTSP30990 170 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 BTCP35070 178 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 MAP3K8P41279 467 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 PTGFRP43088 359 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OMPP47874 163 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CCL11P51671 97 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SUCLG1P53597 346 aaKnown RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 TGM3Q08188 693 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 TWF1Q12792 350 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SRSF5Q13243 272 aaKnown RBP4.22□□□□□ -1.73
USP40-213ENST00000483216 COTL1Q14019 142 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ARL6IP1Q15041 203 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ZIC1Q15915 447 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ACSM3Q53FZ2 586 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ACTBL2Q562R1 376 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 CTSL3PQ5NE16 218 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 AADACL4Q5VUY2 407 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 PAQR9Q6ZVX9 377 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 FAM220AQ7Z4H9 259 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 COMTD1Q86VU5 262 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SERPINA9Q86WD7 417 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 KDM8Q8N371 416 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ZNF283Q8N7M2 679 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ZDHHC22Q8N966 263 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 HSD17B11Q8NBQ5 300 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 ACBD4Q8NC06 268 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SLC30A7Q8NEW0 376 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 SDR9C7Q8NEX9 313 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR4F15Q8NGB8 312 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR11G2Q8NGC1 345 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR56B1Q8NGI3 324 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR5D16Q8NGK9 328 aa4.22□□□□□ -1.73
USP40-213ENST00000483216 OR9A4Q8NGU2 314 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms