RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 FAM189A2Q15884 450 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 MPV17LQ2QL34 196 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 OLFML2AQ68BL7 652 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 Q6P435 159 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 ACP7Q6ZNF0 438 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 LINC00596Q86U02 117 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 SNX29P2Q8IUI4 249 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 GDPD1Q8N9F7 314 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 LRRC29Q8WV35 223 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 EMG1Q92979 244 aaKnown RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 BORCS5Q969J3 196 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 SEH1LQ96EE3 360 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 ARHGAP5-AS1Q96IT6 56 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 PSMG3-AS1Q96PY0 264 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 CCDC32Q9BV29 185 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 PECRQ9BY49 303 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 CXorf56Q9H5V9 222 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 IFT22Q9H7X7 185 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 UBTD1Q9HAC8 227 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 SAP30LQ9HAJ7 183 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 DIABLOQ9NR28 239 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 FAIMQ9NVQ4 179 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 RASL12Q9NYN1 266 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 RABL2AQ9UBK7 228 aaPredicted RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 FBXO9Q9UK97 447 aaPredicted RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 HSF4Q9ULV5 492 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 RABL2BQ9UNT1 228 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 PLEKHA6Q9Y2H5 1048 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 CACNG2Q9Y698 323 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 ARFGEF3Q5TH69 2177 aa6.93□□□□□ -1.3
USP4-210ENST00000483212 SPTAN1Q13813 2472 aaKnown RBP6.93□□□□□ -1.3
USP4-210ENST00000483212 TANC2Q9HCD6 1990 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 TRAV24A0A0B4J272 114 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 MEIOCA2RUB1 952 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 LANCL1O43813 399 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 SSX5O60225 188 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 PDCD6O75340 191 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 CA11O75493 328 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 RP2O75695 350 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 UPK1BO75841 260 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 NXPH2O95156 264 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 CYB5R3P00387 301 aaPredicted RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 KNG1P01042 644 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 GSTP1P09211 210 aaKnown RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 IL7P13232 177 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 COX6B1P14854 86 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 GNB3P16520 340 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 TNFRSF1AP19438 455 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 AMY2BP19961 511 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 GABRR1P24046 479 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 COL8A1P27658 744 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 DUSP1P28562 367 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 BLVRBP30043 206 aaPredicted RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 SNU13P55769 128 aaKnown RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 DGCR2P98153 550 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 PITPNAQ00169 270 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 GUCA2AQ02747 115 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 PDCD1Q15116 288 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 SPIN3Q5JUX0 258 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 FAM201AQ5SY85 155 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 TEX36Q5VZQ5 186 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 Q6ZPA2 131 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 Q6ZTK2 550 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 FAM90A1Q86YD7 464 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 GPX8Q8TED1 209 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 SMIM4Q8WVI0 70 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 YIPF5Q969M3 257 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 RAB3CQ96E17 227 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 C14orf79Q96F83 325 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 CACNG6Q9BXT2 260 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 EGLN1Q9GZT9 426 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 CLEC4MQ9H2X3 399 aaPredicted RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 ZMAT3Q9HA38 289 aaKnown RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 SEBOXQ9HB31 216 aaPredicted RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 PALMDQ9NP74 551 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 RNF7Q9UBF6 113 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 ZNF222Q9UK12 451 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 ANAPC10Q9UM13 185 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 PPP1R3CQ9UQK1 317 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 LAMP3Q9UQV4 416 aa6.92□□□□□ -1.3
USP4-210ENST00000483212 MRPS7Q9Y2R9 242 aaKnown RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 RBMX2Q9Y388 322 aaKnown RBP6.92□□□□□ -1.3
USP4-210ENST00000483212 LRBAP50851 2863 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 CHD3Q12873 2000 aaKnown RBP6.91□□□□□ -1.3
USP4-210ENST00000483212 CACNA1DQ01668 2161 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 IGKV1D-17A0A075B6S4 117 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 IGHV1-69-2A0A0G2JMI3 117 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 hCG_1807616A0A1W2PRN6 198 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 TMEM235A6NFC5 223 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 TMEM178BH3BS89 294 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 GABARAPH6UMI1 98 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 SLC33A1O00400 549 aaPredicted RBP6.91□□□□□ -1.3
USP4-210ENST00000483212 TNFRSF13BO14836 293 aaPredicted RBP6.91□□□□□ -1.3
USP4-210ENST00000483212 OR7C1O76099 320 aaPredicted RBP6.91□□□□□ -1.3
USP4-210ENST00000483212 OR2H2O95918 312 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 HAND1O96004 215 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 TFF1P04155 84 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 PSG2P11465 335 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 GLRA1P23415 457 aa6.91□□□□□ -1.3
USP4-210ENST00000483212 LMO1P25800 156 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms