RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PQLC2LA1A4F0 135 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 MGST1P10620 155 aaKnown RBP11.92□□□□□ -0.5
USP42-206ENST00000479544 ERGP11308 486 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 KRTDAPP60985 99 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 KIAA0895LQ68EN5 471 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 PECRQ9BY49 303 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 OR51I2Q9H344 312 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 TP53TG5Q9Y2B4 290 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 TRAV39A0A0B4J263 110 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 NKX2-6A6NCS4 301 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 FRG2CA6NGY1 282 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 H0YIZ8 118 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 J3QRE1 110 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 PGA4P0DJD7 388 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 PGA5P0DJD9 388 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 TCN2P20062 427 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 ECI1P42126 302 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 BSCL2Q96G97 398 aaPredicted RBP11.92□□□□□ -0.5
USP42-206ENST00000479544 ATG101Q9BSB4 218 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 GPR87Q9BY21 358 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 LPAR5Q9H1C0 372 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 SLC25A22Q9H936 323 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 RYDENQ9NUL5 291 aaKnown RBP11.92□□□□□ -0.5
USP42-206ENST00000479544 ANXA10Q9UJ72 324 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 GPR179Q6PRD1 2367 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 FANCMQ8IYD8 2048 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 A0A1W2PPE3 182 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 CD8AP01732 235 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 CDCA3Q99618 268 aaPredicted RBP11.91□□□□□ -0.5
USP42-206ENST00000479544 SIP14410 1827 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 LINC01565O15544 149 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 ASAH2BP0C7U1 165 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 PAX6P26367 422 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 FZD2Q14332 565 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 SHBQ15464 509 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 HOGA1Q86XE5 327 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 SLC39A7Q92504 469 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 GNRHR2Q96P88 292 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 SLC2A9Q9NRM0 540 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 KLF15Q9UIH9 416 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 GATCO43716 136 aaKnown RBP11.91□□□□□ -0.5
USP42-206ENST00000479544 CHST1O43916 411 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 HABP2Q14520 560 aaPredicted RBP11.91□□□□□ -0.5
USP42-206ENST00000479544 CDCP2Q5VXM1 449 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 AP1S3Q96PC3 154 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 KRASP01116 189 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 HKR1P10072 659 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 CASP6P55212 293 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 SPINK9Q5DT21 86 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 ZNF574Q6ZN55 896 aaPredicted RBP11.91□□□□□ -0.5
USP42-206ENST00000479544 OR10J5Q8NHC4 309 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 PSENENQ9NZ42 101 aa11.91□□□□□ -0.5
USP42-206ENST00000479544 A0A0G2JMZ2 1700 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 LRRC37A2A6NM11 1700 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 TERTO14746 1132 aaKnown RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 CAPZBP47756 277 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 MAML2Q8IZL2 1156 aaPredicted RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 OSR2Q8N2R0 312 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ADAMTS17Q8TE56 1095 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 TIMP4Q99727 224 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 SLC2A8Q9NY64 477 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 FUT9Q9Y231 359 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ANKRD30BLA7E2S9 258 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ATXN7O15265 892 aaPredicted RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 EIF1BO60739 113 aaKnown RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 EIF1P41567 113 aaKnown RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 EWSR1Q01844 656 aaKnown RBP eCLIP11.9□□□□□ -0.5
USP42-206ENST00000479544 DHODHQ02127 395 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 EIF4E3Q8N5X7 224 aaKnown RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 OR10G3Q8NGC4 313 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 A0A1B0GX78 115 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 A8MXE2 369 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ALG1L2C9J202 215 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ZNF217O75362 1048 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 SYNGR4O95473 234 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ZNF90Q03938 601 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 CLN3Q13286 438 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 TIPARPQ7Z3E1 657 aaKnown RBP11.9□□□□□ -0.5
USP42-206ENST00000479544 SLC35G3Q8N808 338 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 MOB1AQ9H8S9 216 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 ZDHHC11Q9H8X9 412 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 P4HTMQ9NXG6 502 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 MTCH2Q9Y6C9 303 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 R4GN57 208 aa11.9□□□□□ -0.5
USP42-206ENST00000479544 LOC102725191A0A1B0GVB3 256 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 G3V3Q6 166 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 DHHO43323 396 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 MRPL33O75394 65 aaKnown RBP11.89□□□□□ -0.51
USP42-206ENST00000479544 MBPP02686 304 aaPredicted RBP11.89□□□□□ -0.51
USP42-206ENST00000479544 GDF1P27539 372 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 DDTP30046 118 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 EGR4Q05215 589 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP42-206ENST00000479544 PIGYQ3MUY2 71 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 MS4A10Q96PG2 267 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 KITLGP21583 273 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 CPT1CQ8TCG5 803 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 EXTL1Q92935 676 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 PARD6AQ9NPB6 346 aa11.89□□□□□ -0.51
USP42-206ENST00000479544 RALGAPA2Q2PPJ7 1873 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms