RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 METTL1Q9UBP6 276 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 AASSQ9UDR5 926 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF391Q9UJN7 358 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 GNG8Q9UK08 70 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 MGAT4AQ9UM21 535 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 GTF2A1LQ9UNN4 478 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 EXOSC1Q9Y3B2 195 aaKnown RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 LRP12Q9Y561 859 aa5.29□□□□□ -1.56
SF3B1-209ENST00000479532 USP9XQ93008 2570 aaPredicted RBP5.29□□□□□ -1.56
SF3B1-209ENST00000479532 HELZ2Q9BYK8 2649 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 GCN1Q92616 2671 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 FAM240BA0A1B0GVZ2 78 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TMEM269A0A1B0GVZ9 245 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 PLSCR5A0PG75 271 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 B9A039 149 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 E7EQL1 145 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 INMT-MINDY4F8WBC2 141 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 J3QLW9 94 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SLC31A2O15432 143 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 PLA2G10O15496 165 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 FABP7O15540 132 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 LYRM1O43325 122 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TIMM8AO60220 97 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SSX4O60224 188 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 RGS11O94810 467 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 PLAUP00749 431 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 OR4A8P0C604 315 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF19P17023 458 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 GALP22466 123 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 GADD45AP24522 165 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 DNASE1P24855 282 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 LOXP28300 417 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SLC6A1P30531 599 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SDC2P34741 201 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 THBS4P35443 961 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SERPINF1P36955 418 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 WNT5AP41221 380 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 POU3F4P49335 361 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 EVX1P49640 407 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 AKR1D1P51857 326 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 HCCSP53701 268 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 KLF3P57682 345 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF121P58317 390 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NHLH2Q02577 135 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ST3GAL4Q11206 333 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SMN1Q16637 294 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 KRTAP27-1Q3LI81 207 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 BCL2L15Q5TBC7 163 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ATPAF1Q5TC12 328 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TRIQKQ629K1 86 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 HIST2H2BCQ6DN03 193 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 AHSA2Q719I0 299 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 FAM57BQ71RH2 274 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 COMMD2Q86X83 199 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SPAG16Q8N0X2 631 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SVBPQ8N300 66 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 FTMTQ8N4E7 242 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 PAQR4Q8N4S7 273 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 MS4A15Q8N5U1 240 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 C19orf18Q8NEA5 215 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 OR52I1Q8NGK6 324 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 OR10S1Q8NGN2 331 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SLC25A40Q8TBP6 338 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NEUROG1Q92886 237 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 PIGTQ969N2 578 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 MRPL24Q96A35 216 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SPSB4Q96A44 273 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 SLC25A46Q96AG3 418 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TRMT61AQ96FX7 289 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NARS2Q96I59 477 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NEU1Q99519 415 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 C2orf88Q9BSF0 95 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 C1QTNF5Q9BXJ0 243 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TTTY10Q9BZA0 68 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NKX6-2Q9C056 277 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 EGLN1Q9GZT9 426 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 MED28Q9H204 178 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 RGCCQ9H4X1 137 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 DYNLRB1Q9NP97 96 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 MYOZ1Q9NP98 299 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ISYNA1Q9NPH2 558 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 CYSLTR2Q9NS75 346 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 CBLN4Q9NTU7 201 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ZNF69Q9UC07 566 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 KLHDC2Q9Y2U9 406 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 NOP16Q9Y3C1 178 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 R4GMQ9 66 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TENM4Q6N022 2769 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 FLNCQ14315 2725 aa5.28□□□□□ -1.56
SF3B1-209ENST00000479532 ANKHD1Q8IWZ3 2542 aaKnown RBP5.28□□□□□ -1.56
SF3B1-209ENST00000479532 TMEM218A2RU14 115 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 C9orf170A2RU37 121 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 RAB19A4D1S5 217 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 GGT3PA6NGU5 568 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 HMSDA8MTL9 139 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 A8MV72 311 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-209ENST00000479532 J3QRE1 110 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 PDCD5O14737 125 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 XPNPEP2O43895 674 aa5.27□□□□□ -1.57
SF3B1-209ENST00000479532 GPRIN2O60269 458 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms