RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CALCRP30988 508 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 LHX2P50458 406 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 PAN3Q58A45 887 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 LYZL2Q7Z4W2 148 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 GPR87Q9BY21 358 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 OR5AC2Q9NZP5 309 aa11.88□□□□□ -0.51
CCDC88A-211ENST00000471947 LRP3O75074 770 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 SCTP09683 121 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 TAS2R46P59540 309 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 PDZK1IP1Q13113 114 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ESCO2Q56NI9 601 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 OR5AP2Q8NGF4 316 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ADAT1Q9BUB4 502 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 OPN3Q9H1Y3 402 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC34A2O95436 690 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 F12P00748 615 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 GSTP1P09211 210 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 CBX5P45973 191 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ID4P47928 161 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 CLDN18P56856 261 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 TMEM128Q5BJH2 165 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 NARFLQ9H6Q4 476 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 IGLV3-32A0A0A0MS00 114 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 MSGN1A6NI15 193 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 TUSC2O75896 110 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF806P0C7X5 589 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF735P0CB33 412 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 TGFBR3Q03167 851 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 TMEM268Q5VZI3 342 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 C11orf87Q6NUJ2 197 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF695Q8IW36 515 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 OR6S1Q8NH40 331 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ST8SIA2Q92186 375 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 MARS2Q96GW9 593 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 FOXD3Q9UJU5 478 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 ZNF292O60281 2723 aa11.87□□□□□ -0.51
CCDC88A-211ENST00000471947 CST2P09228 141 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 AKR1C3P42330 323 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 ZFP62Q8NB50 900 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 OR5M8Q8NGP6 311 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 RPS4Y2Q8TD47 263 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 IER2Q9BTL4 223 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SF3B5Q9BWJ5 86 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SPRR3Q9UBC9 169 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 CST7O76096 145 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 DKK1O94907 266 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 CRYZL1O95825 349 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 OR8U9P0C7N5 309 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SPINK9Q5DT21 86 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 PRAMEF6Q5VXH4 476 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 NSUN5P2Q63ZY6 315 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 OR8U1Q8NH10 309 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 LINC00052Q96N35 136 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SCGB3A2Q96PL1 93 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC17A5Q9NRA2 495 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 NUP210LQ5VU65 1888 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 SULT1C2O00338 296 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 TK1P04183 234 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 RAB6AP20340 208 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 P2RX3P56373 397 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 OR2A2Q6IF42 318 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 TMEM88Q6PEY1 159 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 ANXA10Q9UJ72 324 aa11.86□□□□□ -0.51
CCDC88A-211ENST00000471947 C21orf140B9A014 251 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 DEGS1O15121 323 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 AADACP22760 399 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 FUT6P51993 359 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 FOXF2Q12947 444 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 LY6G6FQ5SQ64 297 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 OR1S1Q8NH92 325 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 SNIP1Q8TAD8 396 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 RBPMSQ93062 196 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 FAM96BQ9Y3D0 163 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 PLSCR5A0PG75 271 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 M0R1B8 84 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 CYTIPO60759 359 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 IFNA2P01563 188 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 UBBP0CG47 229 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 AGTR1P30556 359 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 RAG2P55895 527 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 C10orf128Q5T292 105 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 OR10V1Q8NGI7 309 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 FN3KRPQ9HA64 309 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 RABL2AQ9UBK7 228 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 RABL2BQ9UNT1 228 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 ANKHD1Q8IWZ3 2542 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 WNT9BO14905 357 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 EDDM3BP56851 147 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 VAMP2P63027 116 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 GPR137Q96N19 417 aa11.85□□□□□ -0.51
CCDC88A-211ENST00000471947 MFNGO00587 321 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SCGNO76038 276 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 ZBTB25P24278 435 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 GFRA1P56159 465 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 FAM53AQ6NSI3 398 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 LHFPL2Q6ZUX7 228 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC25A42Q86VD7 318 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 RPRMLQ8N4K4 120 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 SLC25A40Q8TBP6 338 aa11.84□□□□□ -0.51
CCDC88A-211ENST00000471947 DDA1Q9BW61 102 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms