RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 FAM58AQ8N1B3 248 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 C11orf42Q8N5U0 333 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 ZNF676Q8N7Q3 588 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 PPP1R35Q8TAP8 253 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 RNF166Q96A37 237 aaPredicted RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 FGGYQ96C11 551 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 ALG8Q9BVK2 526 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 CHST6Q9GZX3 395 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 RANBP3Q9H6Z4 567 aaPredicted RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 FRRS1LQ9P0K9 344 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 IL36RNQ9UBH0 155 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 GLS2Q9UI32 602 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 TBL2Q9Y4P3 447 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 PCDHGB5Q9Y5G0 923 aa11.33□□□□□ -0.6
USP4-206ENST00000461553 PRKDCP78527 4128 aaKnown RBP11.33□□□□□ -0.6
USP4-206ENST00000461553 IGKV1-9A0A0C4DH69 117 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 TMEM82A0PJX8 343 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 E9PQ18 207 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 IGHA1P01876 353 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 IGHV1-8P0DP01 117 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 PAX6P26367 422 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 MEF2CQ06413 473 aaPredicted RBP11.32□□□□□ -0.6
USP4-206ENST00000461553 ALKBH1Q13686 389 aaKnown RBP11.32□□□□□ -0.6
USP4-206ENST00000461553 PLA1AQ53H76 456 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 ASPHD2Q6ICH7 369 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 SLC35E4Q6ICL7 350 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 C11orf88Q6PI97 169 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 TCF23Q7RTU1 214 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 TRAPPC6BQ86SZ2 158 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 OR13C9Q8NGT0 318 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 OR2T6Q8NHC8 308 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 RFT1Q96AA3 541 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 LGALS12Q96DT0 336 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 PELI1Q96FA3 418 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 AJUBAQ96IF1 538 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 Q96MT0 163 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 NPFFR1Q9GZQ6 430 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 ABCB10Q9NRK6 738 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 INPP5EQ9NRR6 644 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 FBLN5Q9UBX5 448 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 EXOGQ9Y2C4 368 aaKnown RBP11.32□□□□□ -0.6
USP4-206ENST00000461553 LINC00312Q9Y6C7 94 aa11.32□□□□□ -0.6
USP4-206ENST00000461553 ODF3BA8MYP8 253 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 KCNAB3O43448 404 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 FADS2O95864 444 aaKnown RBP11.31□□□□□ -0.6
USP4-206ENST00000461553 NPBWR2P48146 333 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 DYNC1I2Q13409 638 aaKnown RBP11.31□□□□□ -0.6
USP4-206ENST00000461553 GALEQ14376 348 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 ZNF626Q68DY1 528 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 Q6ZTK2 550 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 LHFPL4Q7Z7J7 247 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 SYS1Q8N2H4 156 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 TPRX1Q8N7U7 411 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 DTX3Q8N9I9 347 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 OR51A4Q8NGJ6 313 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 OR10AC1Q8NH08 325 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 COMMD4Q9H0A8 199 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 SEBOXQ9HB31 216 aaPredicted RBP11.31□□□□□ -0.6
USP4-206ENST00000461553 EXOSC4Q9NPD3 245 aaKnown RBP11.31□□□□□ -0.6
USP4-206ENST00000461553 AASSQ9UDR5 926 aa11.31□□□□□ -0.6
USP4-206ENST00000461553 TMEM212A6NML5 194 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 OR4C45A6NMZ5 311 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 VGLL3A8MV65 326 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 SIRPB1O00241 398 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 MGST3O14880 152 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 TSPAN15O95858 294 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 HCKP08631 526 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 RPSAP08865 295 aaKnown RBP11.3□□□□□ -0.6
USP4-206ENST00000461553 CCDC159P0C7I6 412 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 GABRB1P18505 474 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 DUSP1P28562 367 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 DEFA6Q01524 100 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 RAB40BQ12829 278 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 MRPL28Q13084 256 aaKnown RBP11.3□□□□□ -0.6
USP4-206ENST00000461553 PDZK1IP1Q13113 114 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 ZNF146Q15072 292 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 FAM189A2Q15884 450 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 LHFPL3Q86UP9 236 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 PQLC1Q8N2U9 271 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 OR11H6Q8NGC7 330 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 OR5D18Q8NGL1 313 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 RPS4Y2Q8TD47 263 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 TSEN15Q8WW01 171 aaKnown RBP11.3□□□□□ -0.6
USP4-206ENST00000461553 SPACA5Q96QH8 159 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 NKX3-1Q99801 234 aaPredicted RBP11.3□□□□□ -0.6
USP4-206ENST00000461553 S100A14Q9HCY8 104 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 TCF19Q9Y242 345 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 GSTK1Q9Y2Q3 226 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 SESN1Q9Y6P5 492 aa11.3□□□□□ -0.6
USP4-206ENST00000461553 FUOMA2VDF0 154 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 FAM90A8PA6NJQ4 464 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 F2RL2O00254 374 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 EBAG9O00559 213 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 SH2D1BO14796 132 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 CHST1O43916 411 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 PSPNO60542 156 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 KDM4BO94953 1096 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 MT-ND2P03891 347 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 CALCBP10092 127 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms