RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RPS15P62841 145 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 RPL32P62910 135 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 FABP5Q01469 135 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SELENBP1Q13228 472 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MADCAM1Q13477 382 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 HTR4Q13639 388 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TPBGQ13641 420 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SERTAD2Q14140 314 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OR1Q1Q15612 314 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MAPK14Q16539 360 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 DEFB110Q30KQ9 67 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 KLHL12Q53G59 568 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MRPL2Q5T653 305 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 FHL5Q5TD97 284 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 AADACL4Q5VUY2 407 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 RSBN1Q5VWQ0 802 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 NXNL2Q5VZ03 156 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 FAM131AQ6UXB0 335 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 ZNF600Q6ZNG1 722 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 AKAP14Q86UN6 197 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LHFPL3Q86UP9 236 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OOSP2Q86WS3 158 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MARCH9Q86YJ5 346 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 C9orf40Q8IXQ3 194 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CA13Q8N1Q1 262 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 GTPBP8Q8N3Z3 284 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 CLDN22Q8N7P3 220 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CDRT4Q8N9R6 151 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 BBS1Q8NFJ9 593 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OR4C5Q8NGB2 326 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OR52R1Q8NGF1 315 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OR52L1Q8NGH7 329 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 PFN4Q8NHR9 129 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 FANK1Q8TC84 345 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 VN1R17PQ8TDU5 208 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TSEN15Q8WW01 171 aaKnown RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 TMEM239Q8WW34 195 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 AP3S1Q92572 193 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 ITFG2Q969R8 447 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SLC25A46Q96AG3 418 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TECTBQ96PL2 329 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 STACQ99469 402 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SDHCQ99643 169 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 PRSS27Q9BQR3 290 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MED18Q9BUE0 208 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TMED9Q9BVK6 235 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 CHIAQ9BZP6 476 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 SRRQ9GZT4 340 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MIXL1Q9H2W2 232 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 OR52D1Q9H346 318 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TCEAL2Q9H3H9 227 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 SIAEQ9HAT2 523 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TMEM27Q9HBJ8 222 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 ZNF160Q9HCG1 818 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 LYRM4Q9HD34 91 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 ISYNA1Q9NPH2 558 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 INIPQ9NRY2 104 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 HRASLS2Q9NWW9 162 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 IL20Q9NYY1 176 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MAT2BQ9NZL9 334 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 ZNF223Q9UK11 482 aaPredicted RBP3.2□□□□□ -1.9
VPS29-202ENST00000447578 PITPNC1Q9UKF7 332 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TBC1D24Q9ULP9 559 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 TRAPPC4Q9Y296 219 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MED31Q9Y3C7 131 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 V9GYH0 126 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MYOFQ9NZM1 2061 aa3.2□□□□□ -1.9
VPS29-202ENST00000447578 MN1Q10571 1320 aaPredicted RBP3.19□□□□□ -1.9
VPS29-202ENST00000447578 SRCAPQ6ZRS2 3230 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 CROCCQ5TZA2 2017 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 ARPC4-TTLL3A0A0A6YYG9 625 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 A0A0J9YWU9 116 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 A0A1B0GWB2 263 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 TRDV1A0A1B0GX56 115 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 DAPL1A0PJW8 107 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 OR5K4A6NMS3 321 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 FAM25AB3EWG3 89 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 FAM25CB3EWG5 89 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 FAM25GB3EWG6 89 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 SHISA9B4DS77 424 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 PRAMEF26H0Y7S4 382 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 GABRPO00591 440 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 BHLHE40O14503 412 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 HCRTR1O43613 425 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 GALR3O60755 368 aaPredicted RBP3.19□□□□□ -1.9
VPS29-202ENST00000447578 HPGDSO60760 199 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 RDH16O75452 317 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 REM1O75628 298 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 VENTXO95231 258 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 LYPD3O95274 346 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 LALBAP00709 142 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 MRPL3P09001 348 aaKnown RBP3.19□□□□□ -1.9
VPS29-202ENST00000447578 IL7P13232 177 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 ZNF24P17028 368 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 CELP19835 753 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 KITLGP21583 273 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 RPS4Y1P22090 263 aaKnown RBP3.19□□□□□ -1.9
VPS29-202ENST00000447578 IGHV1-2P23083 117 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 ZNF136P52737 540 aa3.19□□□□□ -1.9
VPS29-202ENST00000447578 NKX2-5P52952 324 aaPredicted RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms