RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 WNT5BQ9H1J7 359 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 LIME1Q9H400 295 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 SMDT1Q9H4I9 107 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 BIN3Q9NQY0 253 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 LUZP4Q9P127 313 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 A0A1B0GW64 132 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 CYTIPO60759 359 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 OR5AC1P0C628 307 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 SPP1P10451 314 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 FUT3P21217 361 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 NME2P22392 152 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 RAB13P51153 203 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 ZXDAP98168 799 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 PSG4Q00888 419 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 AVPI1Q5T686 147 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 Q6ZRG5 221 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 COLCA1Q6ZS62 124 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 LFNGQ8NES3 379 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 OR2AE1Q8NHA4 323 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 KIRREL1Q96J84 757 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 JSRP1Q96MG2 331 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-207ENST00000433762 LINC00470Q9BZP3 86 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 EGLN1Q9GZT9 426 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 SMCO4Q9NRQ5 59 aa11.84□□□□□ -0.51
COL6A3-207ENST00000433762 ST8SIA3O43173 380 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 SPRY1O43609 319 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-207ENST00000433762 ANGPTL7O43827 346 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 LMO1P25800 156 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 CLDN15P56746 228 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 PEA15Q15121 130 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 C15orf54Q8N8G6 183 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 TUBA4BQ9H853 241 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 GPR35Q9HC97 309 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 LSM5Q9Y4Y9 91 aaKnown RBP11.83□□□□□ -0.52
COL6A3-207ENST00000433762 IGKV3D-15A0A087WSY6 115 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 IGKV1-12A0A0C4DH73 117 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 FARS2O95363 451 aaKnown RBP11.83□□□□□ -0.52
COL6A3-207ENST00000433762 CER1O95813 267 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 IGKV1D-12P01611 117 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 IFNA4P05014 189 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 COX5BP10606 129 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 RCC1P18754 421 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-207ENST00000433762 TMEM88Q6PEY1 159 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 SLC22A25Q6T423 547 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 CBLN2Q8IUK8 224 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 OR8G5Q8NG78 346 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 OR14L1PQ8NHC6 308 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 GLYATL2Q8WU03 294 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 MARS2Q96GW9 593 aaKnown RBP11.83□□□□□ -0.52
COL6A3-207ENST00000433762 ST3GAL6Q9Y274 331 aa11.83□□□□□ -0.52
COL6A3-207ENST00000433762 TNRC6AQ8NDV7 1962 aaKnown RBP11.82□□□□□ -0.52
COL6A3-207ENST00000433762 LRRC3CA6NJW4 275 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 GEMIN2O14893 280 aaKnown RBP11.82□□□□□ -0.52
COL6A3-207ENST00000433762 MMP7P09237 267 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-207ENST00000433762 HERV-K104P61576 105 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 FAM219AQ8IW50 185 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 FBXL14Q8N1E6 418 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 OR4D5Q8NGN0 318 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 SPIN2AQ99865 258 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 SPIN2BQ9BPZ2 258 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 PARPBPQ9NWS1 579 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 PLA2G2EQ9NZK7 142 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 MED12Q93074 2177 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 TDGF1P13385 188 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 B4GALT1P15291 398 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 SNCAP37840 140 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 CEACAM16Q2WEN9 425 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 RNF212Q495C1 297 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 DMRTC1Q5HYR2 192 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 OR10D3Q8NH80 312 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 SLC39A7Q92504 469 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 GTF3AQ92664 365 aaKnown RBP11.82□□□□□ -0.52
COL6A3-207ENST00000433762 TOMM40LQ969M1 308 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 TMEM231Q9H6L2 316 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 FAM96BQ9Y3D0 163 aa11.82□□□□□ -0.52
COL6A3-207ENST00000433762 NCKAP5O14513 1909 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 TSPAN15O95858 294 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 MMP9P14780 707 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 NTF4P34130 210 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 OPRM1P35372 400 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 RRADP55042 308 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 PLCXD3Q63HM9 321 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 FBXW12Q6X9E4 464 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 FOXRED2Q8IWF2 684 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 C11orf1Q9H5F2 150 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 CACFD1Q9UGQ2 172 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 COL27A1Q8IZC6 1860 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-207ENST00000433762 RPL36A-HNRNPH2H7BZ11 118 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 CXCL13O43927 109 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 CD80P33681 288 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 ZNF92Q03936 586 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 FOXO1Q12778 655 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 ZNF468Q5VIY5 522 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-207ENST00000433762 PPP1R32Q7Z5V6 425 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 AKR7LQ8NHP1 331 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 ERGIC1Q969X5 290 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 TMEM56Q96MV1 263 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 OPA3Q9H6K4 179 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 TMEM56-RWDD3S4R434 201 aa11.81□□□□□ -0.52
COL6A3-207ENST00000433762 CLEC18AA5D8T8 446 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms